Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3 113 4e-20 seq33 95.1 1e-14 >seq3 Length=24902066 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| ||||| || || ||||| | || || ||||| || ||||| Sbjct 14703007 CCATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAACCCA 14702948 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||| | ||||| | || || || || || |||||||||||||| || || || | Sbjct 14702947 GTGACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACC 14702888 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||| | | || | |||||||| || | ||||| | ||| | || || |||| Sbjct 14702887 AGCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACA 14702828 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || || ||||| ||| | ||| | || ||||| || |||| ||||| Sbjct 14702827 ACATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGCGGCAT 14702776 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || || || |||||| | || |||||||| || || || Sbjct 14702550 CATGCAAATTTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTAGAGCCCAG 14702491 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | | |||| || || || || || ||||| |||||||| || || || || Sbjct 14702490 CGACACTGTGGAGAACGTGAAGACCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCA 14702431 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||||| || || | ||||| | ||| | || |||||||| Sbjct 14702430 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACCCTCTCTGATTACAA 14702371 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||| || || ||| | ||| | || |||||| || |||| ||||| Sbjct 14702370 CATCCAAAAAGAATCCACCCTTCATCTTGTCTTGCGTCTGAGGGGGGGCAT 14702320 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || ||||| | ||||| ||||| || || | Sbjct 14702781 CGGCATGCAGATCTTCGTCAAGACCCTCACAGGCAAAACCATTACCCTTGAGGTTGAGGC 14702722 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 ||| | ||||| | || || || || || |||||||||||||| || || || Sbjct 14702721 CAGTGACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGA 14702662 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||| | | || | ||||| || || | ||||| | ||| | || ||||| Sbjct 14702661 CCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACCCTCTCTGATTA 14702602 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||| || || ||| | ||| | || |||||| || |||| ||||| Sbjct 14702601 CAACATCCAAAAAGAATCCACCCTTCATCTTGTCTTGCGTCTGAGGGGGGGCAT 14702548 >seq33 Length=5647056 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || || || || || || || Sbjct 8041 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 8100 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || ||||| || || || || Sbjct 8101 GACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 8160 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||||||||||| ||||||| | ||| | || || |||||| Sbjct 8161 CAAAGGCTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 8220 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || ||| | ||| | || |||| || ||||||| Sbjct 8221 ATCCAGAAGGAATCCACCCTCCATCTTGTCCTGCGCCTGAGGGGTGG 8267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434888216663040