Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 9e-16 seq3 93.3 4e-14 >seq6 Length=17716291 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || | || || || | || |||||||| Sbjct 10620540 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTGC 10620599 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || |||||||||||||| ||| | || ||| || ||| ||| || Sbjct 10620600 TTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGGATGCCCTCCTTATCCTGGATCTTG 10620659 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | || | | || ||||| | |||||| |||| ||||| | || || ||| Sbjct 10620660 GCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 10620719 Query 39262 AGCGTTTTAACAAAGATTTGCATCTTTAC 39290 || || || |||||||| |||||||| || Sbjct 10620720 AGGGTCTTGACAAAGATCTGCATCTTGAC 10620748 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||| | || || ||| ||| || || || || || || | Sbjct 10619604 CCCCCTCTCAGACGAAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 10619663 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || |||||||| ||||| ||||| || |||||||||||||| ||| Sbjct 10619664 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGG 10619723 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| || ||| ||| || || | || | | || ||||| | |||||| Sbjct 10619724 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACC 10619783 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | || || |||||||| || || ||||| ||||| Sbjct 10619784 TCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 10619830 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || | || || || | || |||||||| Sbjct 10619856 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTGC 10619915 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || |||||||||||||| ||| | || ||| || ||| ||| || Sbjct 10619916 TTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGGATGCCCTCCTTATCCTGGATCTTG 10619975 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | || | | || ||||| | |||||| |||| ||||| | || || ||| Sbjct 10619976 GCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 10620035 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || ||||| ||||| Sbjct 10620036 AGCGTCTTGACGAAGATCTGCAT 10620058 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || | || || || | || |||||||| Sbjct 10620084 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTGC 10620143 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || |||||||||||||| ||| | || ||| || ||| ||| || Sbjct 10620144 TTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGGATGCCCTCCTTATCCTGGATCTTG 10620203 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | || | | || ||||| | |||||| |||| ||||| | || || ||| Sbjct 10620204 GCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 10620263 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || ||||| ||||| Sbjct 10620264 AGCGTCTTGACGAAGATCTGCAT 10620286 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || | || || || | || |||||||| Sbjct 10620312 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTGC 10620371 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || |||||||||||||| ||| | || ||| || ||| ||| || Sbjct 10620372 TTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGGATGCCCTCCTTATCCTGGATCTTG 10620431 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | || | | || ||||| | |||||| |||| ||||| | || || ||| Sbjct 10620432 GCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 10620491 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || ||||| ||||| Sbjct 10620492 AGCGTCTTGACGAAGATCTGCAT 10620514 >seq3 Length=24902066 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || ||| ||||| || || ||||| |||| || ||||| | || || Sbjct 14701541 ACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGAGAGGGTTCGGCCATCCTCT 14701600 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| ||||| || || | |||||| || | || | || || |||||| | Sbjct 14701601 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCCTGG 14701660 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || ||| | || | || || || || | ||| || || | ||||| | || Sbjct 14701661 ATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCAACCTCTAGGGTGATGGTCTTG 14701720 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || |||||||| ||||| Sbjct 14701721 CCAGTCAGGGTCTTGACAAAGATCTGCAT 14701749 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || ||| ||||| || || ||||| |||| || ||||| | || || Sbjct 14701769 ACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGAGAGGGTTCGGCCATCCTCT 14701828 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| ||||| || || | |||||| || | || | || || |||||| | Sbjct 14701829 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCCTGG 14701888 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || ||| | || | || || || || | ||| || || | ||||| | || Sbjct 14701889 ATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCAACCTCTAGGGTGATGGTCTTG 14701948 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || |||||||| ||||| Sbjct 14701949 CCAGTCAGGGTCTTGACAAAGATCTGCAT 14701977 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || ||| ||||| || || ||||| |||| || ||||| | || || Sbjct 14701997 ACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGAGAGGGTTCGGCCATCCTCT 14702056 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| ||||| || || | |||||| || | || | || || |||||| | Sbjct 14702057 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCCTGG 14702116 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | | | || || || || | ||| || |||| ||||| | || Sbjct 14702117 ATCTTGGCCTTCACATTTTCAACTGTGTCACTAGCCTCAACCTCCAGGGTGATGGTCTTG 14702176 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || |||||||||||||| Sbjct 14702177 CCAGTCAGGGTCTTGACAAAGATTTGCAT 14702205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429516534796976