Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3 107 1e-18 seq33 89.7 3e-13 >seq3 Length=24902066 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || ||||| ||||| || || ||||| ||| Sbjct 14703005 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAACCCAGT 14702946 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||||||||| | || || || || Sbjct 14702945 GACACCATTGACAATGTGAAGGCCAAGA-TCCAGGACAAAGAAGGCATTCCCCCTGACCA 14702887 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || || ||||| | ||||| | || ||||| Sbjct 14702886 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAA 14702827 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 14702826 CATCCAGAAAGAGTCCAC 14702809 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || |||||||| || || || |||||||| || || || ||| Sbjct 14702549 ATGCAAATTTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTAGAGCCCAGC 14702490 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||||| || || | || || || | | ||||| ||||| | || || || || Sbjct 14702489 GACACTGTGGAGAACGTGAAGACCAAGA-TCCAGGACAAGGAAGGCATTCCCCCTGACCA 14702431 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || || ||||| | ||||| | |||||||| Sbjct 14702430 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACCCTCTCTGATTACAA 14702371 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||| ||||| Sbjct 14702370 CATCCAAAAAGAATCCAC 14702353 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || ||||| || || || || ||||| ||| Sbjct 14702777 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAAACCATTACCCTTGAGGTTGAGGCCAGT 14702718 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||||||||| | || || || || Sbjct 14702717 GACACCATTGACAATGTGAAGGCCAAGA-TCCAGGACAAAGAAGGCATTCCTCCTGACCA 14702659 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || || ||||| | ||||| | |||||||| Sbjct 14702658 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACCCTCTCTGATTACAA 14702599 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||| ||||| Sbjct 14702598 CATCCAAAAAGAATCCAC 14702581 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || || ||||| ||| Sbjct 14701749 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTTGAGGCCAGT 14701690 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||||||||| ||| | ||||| || || ||||| ||||| | || || ||||| Sbjct 14701689 GACACTGTTGAGAATGTGAAAAC-CAAGATCCAGGACAAGGAAGGCATCCCTCCTGATCA 14701631 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| |||||||| || || || | || || | ||| || || Sbjct 14701630 GCAGAGGCTGATCTTTGCTGGCAAACAGCTAGAGGATGGCCGAACCCTCTCCGACTATAA 14701571 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 14701570 CATCCAGAAAGAATCCAC 14701553 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || || ||||| ||| Sbjct 14701977 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTTGAGGCCAGT 14701918 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||||||||| ||| | ||||| || || ||||| ||||| | || || ||||| Sbjct 14701917 GACACTGTTGAGAATGTGAAAAC-CAAGATCCAGGACAAGGAAGGCATCCCTCCTGATCA 14701859 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| |||||||| || || || | || || | ||| || || Sbjct 14701858 GCAGAGGCTGATCTTTGCTGGCAAACAGCTAGAGGATGGCCGAACCCTCTCCGACTATAA 14701799 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 14701798 CATCCAGAAAGAATCCAC 14701781 Score = 95.1 bits (104), Expect = 8e-15 Identities = 144/202 (71%), Gaps = 10/202 (5%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || || ||||| ||| Sbjct 14701521 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTAGAGGTTGAGGCCAGT 14701462 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||||||||| ||| | ||||| || || ||||| ||||| | || || || || Sbjct 14701461 GACACTGTTGAGAATGTGAAAAC-CAAGATCCAGGACAAGGAAGGCATTCCACCTGACCA 14701403 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCGATT 23785 ||| | | || ||||| || || || |||||||| ||||| | || | || | Sbjct 14701402 GCAGAGGCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGCCGAACCCTCTCT----GACT 14701347 Query 23786 ACAACATACAAAAAGAGTCCAC 23807 ||||||| || ||||| ||||| Sbjct 14701346 ACAACATCCAGAAAGAATCCAC 14701325 >seq33 Length=5647056 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || || ||||| ||| Sbjct 11567 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 11626 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || ||||| |||||| | || || || || Sbjct 11627 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCTGACCAG 11686 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | ||||| | || |||||| Sbjct 11687 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 11746 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 11747 ATCCAGAAGGAATCCAC 11763 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || || ||||| ||| Sbjct 5985 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 6044 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || ||||| || || | || || || || Sbjct 6045 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 6104 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | ||||| | || |||||| Sbjct 6105 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 6164 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| ||||| Sbjct 6165 ATCCAGAAAGAATCCAC 6181 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || || ||||| ||| Sbjct 6441 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 6500 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || || || ||||| ||||| | || || || || Sbjct 6501 GACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 6560 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||||||||| || |||||||| | ||||| | || |||||| Sbjct 6561 CAAAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 6620 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| ||||| Sbjct 6621 ATCCAGAAAGAATCCAC 6637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337986728580416