Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq33 138 3e-27 seq3 138 3e-27 seq284 118 3e-21 seq6 107 5e-18 >seq33 Length=5647056 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||||||||| |||| ||||| || | | || | ||||| Sbjct 6653 CAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 6594 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | ||| ||||| || || || ||||||||||| Sbjct 6593 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGGGGGATGCCTTCCTTGTC 6534 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||| |||||||| || || || || | ||||| || Sbjct 6533 CTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 6474 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 6473 CTTGCCAGTCA 6463 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| |||||||| || |||| ||||| || | | || | ||||| Sbjct 11779 CAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 11720 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || || |||||||||||||| Sbjct 11719 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCTTCCTTGTC 11660 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| ||| |||||||| || || || || | ||||| || Sbjct 11659 CTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 11600 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 11599 CTTGCCAGTCA 11589 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||||||||| |||| || || || | | || | ||||| Sbjct 12007 CAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCAGAGAGGGTGCGACCATC 11948 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || ||||| || || |||||||| Sbjct 11947 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGCGGGATGCCCTCCTTGTC 11888 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || ||| || || | ||||| || Sbjct 11887 CTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATGGT 11828 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 11827 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 11795 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||||||||| |||| ||||| || | | || | ||||| Sbjct 6197 CAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 6138 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || || || || |||||||| Sbjct 6137 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 6078 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| ||| |||||||| || || || || | ||||| || Sbjct 6077 CTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 6018 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 6017 CTTGCCAGTCA 6007 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||||||||| |||| ||||| || | | || | ||||| Sbjct 6425 CAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 6366 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | ||| ||||| || || || || |||||||| Sbjct 6365 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGGGGGATGCCCTCCTTGTC 6306 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||| |||||||| || || || || | ||||| || Sbjct 6305 CTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 6246 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 6245 CTTGCCAGTCA 6235 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| |||||||| || |||| ||||| || | | || | ||||| Sbjct 6881 CAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 6822 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | ||| ||||| || || || ||||||||||| Sbjct 6821 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGGGGGATGCCTTCCTTGTC 6762 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| ||| |||||||| || || || || | ||||| || Sbjct 6761 CTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 6702 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 6701 CTTGCCAGTCA 6691 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||||||||| |||| ||||| || | | || | ||||| Sbjct 8025 CAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 7966 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| || || ||||| || | ||| ||||| || || || || Sbjct 7965 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGGGGGATGCC 7915 >seq3 Length=24902066 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||| ||||| ||||||||||| |||| ||||| || | | |||| ||||| Sbjct 14701309 CAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCATC 14701368 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || ||||| || ||||| ||||||||||| Sbjct 14701369 TTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTC 14701428 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || | ||||| || || || |||| ||||| || Sbjct 14701429 CTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCAACCTCTAGGGTGATGGT 14701488 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 14701489 CTTGCCAGTCA 14701499 Score = 136 bits (150), Expect = 9e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| | |||||| || ||||| ||||||||||| |||| || || |||| | || | Sbjct 14701075 AAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGAGAGGGTGCG 14701134 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 ||||| || |||||||| ||||| ||||| |||| || ||||| || ||||| ||||| Sbjct 14701135 ACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTC 14701194 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||| |||||||| ||||||| || |||||||| || || || |||| || Sbjct 14701195 CTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGCCTCAACCTCTAGGGT 14701254 Query 225675 GATCGTCTTGCCCGT 225689 || |||||||| || Sbjct 14701255 AATGGTCTTGCCTGT 14701269 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 || |||||| || || |||||||||||||||| |||||||| | | || | ||||| Sbjct 14702337 CAAGACAAGATGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCATC 14702396 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || ||||| ||||||||||| Sbjct 14702397 TTCAAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 14702456 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || | ||||| || || || || | ||||| || Sbjct 14702457 CTGGATCTTGGTCTTCACGTTCTCCACAGTGTCGCTGGGCTCTACCTCAAGAGTGATGGT 14702516 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || | || || | ||| | |||||| Sbjct 14702517 CTTGCCTGTGAGGGTCTTGACGAAAATTTGCAT 14702549 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| || ||||| ||||||||||| |||| || || |||| | |||| ||||| Sbjct 14701993 CAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGAGAGGGTTCGGCCATC 14702052 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 |||||||| || ||||| ||||| || | || || || || || || ||||||||||| Sbjct 14702053 CTCTAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTC 14702112 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| ||| | ||||| | || || || | ||||| || Sbjct 14702113 CTGGATCTTGGCCTTCACATTTTCAACTGTGTCACTAGCCTCAACCTCCAGGGTGATGGT 14702172 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | || | |||||| Sbjct 14702173 CTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 14702205 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 || |||||| || || |||||||||||||||| |||||||| | | || | ||||| Sbjct 14702565 CAAGACAAGATGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCATC 14702624 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || ||||| || ||||| ||||| ||||| Sbjct 14702625 TTCAAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTC 14702684 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||||| || |||||||| || || || || | || || || Sbjct 14702685 CTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGCCTCAACCTCAAGGGTAATGGT 14702744 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 14702745 TTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 14702777 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| || ||||| ||||||||||| |||| || || |||| | |||| ||||| Sbjct 14701537 CAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGAGAGGGTTCGGCCATC 14701596 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 |||||||| || ||||| ||||| || | || || || || || || ||||||||||| Sbjct 14701597 CTCTAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTC 14701656 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || | ||||| || || || |||| ||||| || Sbjct 14701657 CTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCAACCTCTAGGGTGATGGT 14701716 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 14701717 CTTGCCAGTCA 14701727 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| || ||||| ||||||||||| |||| || || |||| | |||| ||||| Sbjct 14701765 CAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGAGAGGGTTCGGCCATC 14701824 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 |||||||| || ||||| ||||| || | || || || || || || ||||||||||| Sbjct 14701825 CTCTAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTC 14701884 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| |||||| || | ||||| || || || |||| ||||| || Sbjct 14701885 CTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCAACCTCTAGGGTGATGGT 14701944 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 14701945 CTTGCCAGTCA 14701955 >seq284 Length=2999 Score = 118 bits (130), Expect = 3e-21 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| ||||||| || || | || || ||||| ||||| || ||||||||| | || || Sbjct 2424 CCAAATTTACAATGTCATCGTCACAGCACATGCATTTGTAATAATTTTCTTTATAGTAAT 2365 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || ||||||| || ||||||||||| ||| | || ||| | ||||| || || || || Sbjct 2364 ACCAATTATGATTGGGGGTTTCGGAAACTGACTGGTCCCTCTTATGATCGGGGCCCCCGA 2305 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 |||||| || || | | ||||||||||| |||||| | | || || || || |||| Sbjct 2304 TATGGCCTTCCCCCGAATGAACAATATAAGCTTTTGACTCTTGCCCCCATCTTTTCTTCT 2245 >seq6 Length=17716291 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| ||||| || || |||| ||||| || | | || | |||||| Sbjct 10619619 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 10619678 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || ||||| | || || || ||||| || Sbjct 10619679 TCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGGATGCCCTCCTTATCC 10619738 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || ||||| || | ||||| || | ||||| ||| Sbjct 10619739 TGGATCTTGGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACCTCCAGGGTGATGGTC 10619798 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 10619799 TTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 10619830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192446369293088