Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq33 84.2 2e-11 seq3 84.2 2e-11 >seq33 Length=5647056 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || || || || |||| ||||| ||||| ||| |||| ||||||||| Sbjct 11795 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGC 11854 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111218 || | ||| | || || || || ||||| || ||| ||||| | ||||| Sbjct 11855 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGC-ATCCCGCCTGATCA 11913 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || ||||| || | ||| ||||| || |||||||| | || | | || ||||| Sbjct 11914 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTATAA 11973 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || |||||||| || || ||| | || |||||||| | || |||| Sbjct 11974 CATCCAGAAAGAATCCACCCTCCATCTTGTCCTGCGTCTGAGGGGCGGCA 12023 >seq3 Length=24902066 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| ||||| || | || ||||| ||||| || | || || |||||| Sbjct 14702549 ATGCAAATTTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTAGAGCCCAGC 14702490 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || |||| | | || || || || ||||| |||||| ||||| || || Sbjct 14702489 GACACTGTGGAGAACGTGAAGACCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 14702430 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| || || || | |||||| || | | ||||| || Sbjct 14702429 CAGAGGCTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACCCTCTCTGATTACAAC 14702370 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || ||||||||||| || || ||| | || ||||||||| | || |||| Sbjct 14702369 ATCCAAAAAGAATCCACCCTTCATCTTGTCTTGCGTCTGAGGGGGGGCA 14702321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||||||||| | || ||||||||||| ||| | || |||||||| Sbjct 14703005 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAACCCAGT 14702946 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | | || || || || |||||||||||| ||||| || || Sbjct 14702945 GACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 14702886 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| || | ||| ||||| || | |||||| || | | || || || Sbjct 14702885 CAGAGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAAC 14702826 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || ||||| || || || ||| | || |||||||| | || |||| Sbjct 14702825 ATCCAGAAAGAGTCCACCCTCCATCTTGTCCTGCGTCTGAGGGGCGGCA 14702777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421782658145152