Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 163 7e-35 seq33 118 3e-21 >seq3 Length=24902066 Score = 163 bits (180), Expect = 7e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || |||||||| ||||| || ||||| ||||| || | ||| Sbjct 14702774 CAGATCTTCGTCAAGACCCTCACAGGCAAAACCATTACCCTTGAGGTTGAGGCCAGTGAC 14702715 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| |||||||||||||| || ||||| |||||||| Sbjct 14702714 ACCATTGACAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCTGACCAGCAG 14702655 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| |||||||| ||||| |||||||| | || || | ||||| ||| || Sbjct 14702654 AGGCTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACCCTCTCTGATTACAACATC 14702595 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||||||||| || || |||||||| ||| | || || Sbjct 14702594 CAAAAAGAATCCACCCTTCATCTTGTCTTGCGTCTGAG 14702557 Score = 161 bits (178), Expect = 2e-34 Identities = 169/220 (77%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||||||||| || || |||||||| || || ||||| || ||||| || || ||| Sbjct 14702546 CAAATTTTCGTCAAGACCCTCACAGGCAAGACCATCACTCTTGAGGTAGA--GCCCAGCG 14702489 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| | |||||||| || ||||| |||||||| ||||| || || || ||||||| Sbjct 14702488 ACACTGTGGAGAACGTGAAGACCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAGC 14702429 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| |||||||| ||||| |||||||| | || || | ||||| ||| Sbjct 14702428 AGAGGCTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACCCTCTCTGATTACAACA 14702369 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||||||||||| || || |||||||| ||| | || || Sbjct 14702368 TCCAAAAAGAATCCACCCTTCATCTTGTCTTGCGTCTGAG 14702329 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| ||||| || ||||| |||||||| ||||| ||| | ||| Sbjct 14703002 CAGATCTTTGTCAAAACCCTCACTGGCAAAACCATCACCCTTGAGGTTGAACCCAGTGAC 14702943 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| |||||||||||||| || || || |||||||| Sbjct 14702942 ACCATTGACAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGCAG 14702883 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| ||||| || ||||| |||||||| | || || | || || ||| || Sbjct 14702882 AGGCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCTGACTACAACATC 14702823 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || |||||||| Sbjct 14702822 CAGAAAGAGTCCACCCTCCATCTTGT 14702797 >seq33 Length=5647056 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || || || || || || ||||| || ||||| || || ||| Sbjct 12026 CAGATCTTTGTTAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTTGA--GCCCAGTG 12083 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || |||||||||||||| || || ||||| || || |||| Sbjct 12084 ACACCATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGATCAGC 12143 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||| | |||||||| | || || | || |||||| Sbjct 12144 AGAGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTCTCTGACTATAACA 12203 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 12204 TCCAGAAGGAATCCACCCTCCATCTTGT 12231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203645572581088