Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monopterus_20albus_20[refseq_20GCF_5F001952655.1_202017-01-17] 20,622 sequences; 684,144,148 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq328 214 2e-50 seq34 84.2 2e-11 >seq328 Length=840127 Score = 214 bits (236), Expect = 2e-50 Identities = 638/977 (65%), Gaps = 8/977 (1%) Strand=Plus/Minus Query 47863 TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAG 47922 ||||| || | || || || || || || |||||||| || |||||||||| | | Sbjct 221038 TAACATACATGTTGAGAGCGATGGAAGCCAGATTACAGACCGCTACCTCATCTTTGCCGG 220979 Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982 | |||| | | ||| | || || || | |||||||| || |||| || || || | Sbjct 220978 TGTATTCGACAACTTCTGTGCAGAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 220919 Query 47983 TATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 | | ||| || ||||| ||||| ||||| | ||||| ||||||||| |||| | Sbjct 220918 TGCTCTTCCGGTTGCAGGCGTCTTTGTACAGCATGTATGGTGTACCAGTTTCTGTCTGGG 220859 Query 48043 ATTCAATGATAGATTTCCAAACAG-TCCT-AGCCTTTATAACAGCTCTAGCTTTATTATC 48100 | || || || | | ||| ||| | || |||||| | || | | | | || Sbjct 220858 ACTCGATAATGGCGTACCA--CAGCTGCTGAGCCTTCACCACTCGTTTGACCCTCCCCTC 220801 Query 48101 ATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATA-CACATTATCTAACCCAG 48159 | ||| ||||| || || | | ||| || || ||||| | ||| | ||| | |||| Sbjct 220800 CTTTTCATATTTGGTGTAGAGTTCCTCGAACTCCTCCCCCCAGCAC-TCATCCAGTCCAG 220742 Query 48160 GACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATA 48219 | || || || ||||||||||| ||||| || | | | | ||||| |||| || | Sbjct 220741 GGCACTCGTTCGGACACATCAAAGACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACA 220682 Query 48220 TATCTGGTATCCAAAGAGCTATAAATAA-ATCCCTAGTTCTTAGTTCTTCATTGCCACTA 48278 ||||| ||||| | || ||||| || ||| || | || | || || || || | Sbjct 220681 AGTCTGGGATCCACA-AGGCATAAAAAAGATCTCTGGCCCTCTGCTCCTCCTTCCCTGTG 220623 Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338 ||| | || || || || ||||| | | |||| ||||| || || | || || || Sbjct 220622 TTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCG 220563 Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACT 48398 | | || |||| || || || || || || | ||| | || || ||||| || ||| Sbjct 220562 AAAGCGCCGGGTCTCTTGTTGCCACCCTGGTCGACATAACGTGCCGTGTTGTTGTATACT 220503 Query 48399 CTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTA 48458 || | ||| ||||| | |||||||| | |||||||| || | || || || || | Sbjct 220502 CTCAGCATGGGGACCAGCCCATTTGAATTGCCATTGGTGCCAGCGATGTAGCTCCCTGTG 220443 Query 48459 GCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACAC 48518 ||||| ||| || | | | |||||| || || ||| ||| || || || |||||| Sbjct 220442 GCTCTGATACAGCTGACCGCCACACCTATTCCTCCAGCCGATTTGGAGATGAGGGCACAC 220383 Query 48519 CGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAA 48578 | || || || ||||| || || || || || || || |||| | || || || Sbjct 220382 TGCTTCAGTGTGTCATATATGCCCTCAATGCTGTCGTCCTTCATGGCAAGCAGGAAGCAG 220323 Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 || || | || || || ||||||| |||||| | ||| ||||| ||||| | ||| Sbjct 220322 CTGGATAGCTGTGGCTGTTTGGTTCCTGCATTAAAAAGTGTAGGAGAGGCATGGGTGAAC 220263 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATA 48698 || |||||||| | || || || || ||||| | | || ||||| | || || Sbjct 220262 CACTTCTCTGAGAGCAGGTTGTAGGTCTCAATGGCTGCGTCGATATCGGTTCCGTGGATT 220203 Query 48699 CCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTC 48758 || | || | ||| | ||| | || || | || | | |||| || || ||| Sbjct 220202 CCATCCGCCACTCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTC 220143 Query 48759 AAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCA 48818 | || || || | |||| || || || ||||| ||||||| || || || || || Sbjct 220142 AGCAGGTAGGACCTCTCCAGGGTCTTGAATCCAAAGAAGTTGTAGGAGAAATCTTTGTCG 220083 Query 48819 TTAATAATTGATGAATT 48835 | ||| || | ||||| Sbjct 220082 TAAATGATGGCCGAATT 220066 >seq34 Length=6032531 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || || || |||| || || || | || | ||| ||||| || || || |||| Sbjct 778803 CCTCATCCCTGCTGATCAGCTCGTTGGAGTAGGTAAGACCGGGCATTAGGCCCCTCTTTT 778744 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| | |||| ||||||||| ||||| ||||| || ||||| || |||||||||| Sbjct 778743 TGAGCCAATAGATAGCAGCAAATGAGCCAGAGAAGAAGATGCCTTCCACAGCTGCAAAAG 778684 Query 19103 CAAC 19106 | || Sbjct 778683 CCAC 778680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561963902404080