Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15996 455 4e-123 >seq15996 Length=6831 Score = 455 bits (504), Expect = 4e-123 Identities = 1269/1941 (65%), Gaps = 17/1941 (1%) Strand=Plus/Minus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| || |||| | | ||||| || | || | || || || ||||| Sbjct 2480 TTCTTCATCTCCTCGCTCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTC 2421 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 |||| ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 2420 ACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 2361 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 2360 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 2301 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 | || || || | |||| | ||| || || || || | | ||| | | || Sbjct 2300 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTCCAGTCCAGCAGG 2241 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 53384 || | || | | | || || || || || ||| | || | Sbjct 2240 TCGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGAGAGC 2183 Query 53385 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 53444 || | || || ||||| || || || | || || || || |||||||| | || Sbjct 2182 CTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 2123 Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 |||| || ||||| || ||||| | | || || || || || |||| || || | Sbjct 2122 CGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTCGAACG 2063 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 | || | ||| || || |||||||| || || || || || || ||||| || || | Sbjct 2062 GGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATTCCGATCGGCCTGT 2003 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | | ||| || || | || ||||| || | || || || || || || ||||| || | Sbjct 2002 GGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTGATTTCGATAATCTTGT 1943 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT 53684 | | |||| |||| || |||||| |||| | ||||| ||| ||||| |||| Sbjct 1942 TCAAGTTTTTGACGATGACTTTGGTCACAAACGCTAGTTTTTTAAAGTCAAAA-GTCCGC 1884 Query 53685 CTA----TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTA 53740 | | || ||||||| | || || || ||||||||||| || |||||||||| Sbjct 1883 TCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCG 1824 Query 53741 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 53800 | | || | | ||| || ||||| || || || | |||||||| || | ||| Sbjct 1823 TCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTC 1764 Query 53801 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCA 53860 || || || ||||| |||| || || || || || || ||| | |||||||| ||||| Sbjct 1763 TGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCC 1704 Query 53861 ATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTC 53920 ||||||| || ||||| || | ||| || ||||||| | | ||| ||| Sbjct 1703 GTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTGACCCTC 1644 Query 53921 TTTTCTCTTTCGTA--TAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCA 53978 || | || || | ||||| | || || ||||| || ||||| | ||||| Sbjct 1643 CCCTCCTTCTCATACGTGGTGTACAGCTTC--TCGAACTCCTCCCCCCAGCACTCGTCCA 1586 Query 53979 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 54038 || || || || | ||||||||||| ||||| ||| || || ||||| |||| Sbjct 1585 GCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCA 1526 Query 54039 TAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 54097 | || || || || ||||| | || || ||| || ||||||| || || ||||| ||| Sbjct 1525 TGAACAGGTCGGGGATCCACATGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTTT 1467 Query 54098 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 54157 || || ||||| || || || ||||| | | | || | ||||| || |||| ||| Sbjct 1466 CCGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTAC 1407 Query 54158 ATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 54217 |||| | |||| |||| ||||| |||||||| || | ||| | || ||||| || Sbjct 1406 ATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTTG 1347 Query 54218 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 54277 || ||||||| ||| || | | || ||||| || ||||| |||| ||| ||||| Sbjct 1346 TAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTC 1287 Query 54278 CCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337 || | | || || || | | | || || ||||| ||| || ||||| | Sbjct 1286 CCCGTCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGG 1227 Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397 || || | || | ||| || || ||||| || || || || ||| ||||| || || Sbjct 1226 GCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGG 1167 Query 54398 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457 || ||||| |||| || | | | |||||||| || || | || || || ||||| Sbjct 1166 AAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGG 1107 Query 54458 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGA 54517 || ||||| || || || || || ||||||||||| || |||| | || ||| || Sbjct 1106 GTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGCTGATGTCCGTTTTG 1047 Query 54518 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 54577 || || || || | || | ||| | ||||||||| || | || | | ||| ||| Sbjct 1046 TGGATCCCGACAGATACTCTCATGAGCATGTGCTGCGGACGCTCCGCCACTTTGCCGTTG 987 Query 54578 ATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 54637 || |||| || |||||| |||| || || || || || ||||||| || || || Sbjct 986 ATCTTCAACAGGTAGGACCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCG 927 Query 54638 CGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTA 54697 || ||| | || || |||||||||| || || | | | ||| | || | || Sbjct 926 CGGTCGAAGATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGCGT- 868 Query 54698 ATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATC 54756 | ||| || || || ||||| || | ||| || |||| ||||| | | || Sbjct 867 CTCCTTGGAGATCATGGGAGAGTGGCGTCTATTCAAGGGGTTGATGTAGTTGTACAGGTC 808 Query 54757 CTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCT 54816 || |||||| ||||| || | || || || |||||||| || ||||| ||||| || | Sbjct 807 CTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATCCG 748 Query 54817 AGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGT 54876 || || || ||||| || || || |||| || || ||||| || || || || | Sbjct 747 TGCAGCGAGGATGGCGTAGTCGGGGTGTTTGGTTGTGAGGGTGGCGGCGATCTCTGCGGC 688 Query 54877 CAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 54936 ||| ||||| | || || ||||| || || | || | || ||||| |||||||| | Sbjct 687 CAGCGTGTCGAGCTCCACGGTTGTGACGCCGCTGTACAAACCCTGGATCACCTTCATCGT 628 Query 54937 TATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGA 54996 || | | ||||| | | |||| ||| | || || || | || || ||||| Sbjct 627 AATCTGGGTCGGATCCACAAAGTCAGGGTTCAGCCCGTAGCACAGCTTCTGGATGCGAGA 568 Query 54997 TGTGATTTTATCAAACATGAC 55017 ||||||||||| |||||||| Sbjct 567 CGTGATTTTATCGAACATGAC 547 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || || |||||| || | || || || || ||||| | Sbjct 3268 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCGGCGATGTGGATGT 3209 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| ||| || || || ||||||||||| || | ||| || ||||| || | || |||| Sbjct 3208 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCGGCCATCTTGAGTATGGTCT 3149 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | |||||||| | |||| | ||| || |||| Sbjct 3148 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCAGGAA 3098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593461757741760