Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq471 161 1e-34 seq30050 118 1e-21 seq95 84.2 2e-11 >seq471 Length=23154 Score = 161 bits (178), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || ||||| || || ||||||||| | || || || || Sbjct 16639 AAGATGCAGATCTTTGTGAAGACCCTCACCGGTAAGACCATCACCCTGGAGGTGGAGCCC 16698 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | | | |||| |||| | || || | || || ||||| |||||| |||| Sbjct 16699 AGCGACACCATCGAGAACG-TCAAAGCTAAGATCCAGGATAAGGAGGGAATCCCCCCGGA 16757 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| ||| |||||||||||||| |||| ||||| ||| |||||| Sbjct 16758 CCAGCAGAGGCTGATCTTCGCCGGCAAACAGCTGGAAGACGGCCGCACTCTCTCCGACTA 16817 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| || || || ||| | ||| ||||||| || Sbjct 16818 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGG 16868 >seq30050 Length=2981 Score = 118 bits (130), Expect = 1e-21 Identities = 94/113 (83%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| || ||||| ||||| ||||| || |||||||| | |||| ||| Sbjct 676 GAGCCGCTGCTGAAGGAAAACCCTCGCCGCTTCGTCATCTTCCCCATCAAGTACCACGAC 735 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||||||||||||||||||||||| |||||||| Sbjct 736 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGACCGCAGAGGAGGT 788 Score = 118 bits (130), Expect = 1e-21 Identities = 103/123 (84%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCT-TGAACGACAACGAGCGCCA 116742 ||||||| |||||||||||| | ||| |||||||| ||| |||| ||| | ||| | Sbjct 905 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGAG-GCTCTGAAGGACGAGGAGAGGTT 962 Query 116743 TTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 116802 |||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| || Sbjct 963 CTTCATCTCGCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCT 1022 Query 116803 GGT 116805 ||| Sbjct 1023 GGT 1025 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||| ||||||||| | ||||| |||| ||||| || || || Sbjct 2810 GGTGGAGCGCTTCACACAGGAAGTGCAGGTGACGGAGGCCAGGTGTTTCTATGGTTTCCA 2869 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| ||||||| |||| ||| Sbjct 2870 GATCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTCATCAACACCTAC 2924 >seq95 Length=91801 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| | ||||| || || || || ||||| | ||||| || ||| ||||| Sbjct 11969 GGGGAGCGAATTGTGGCTTTTGCAGCAGTGGAGGGAATATTCTTCTCCGGCTCATTCGCT 11910 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| | |||||||||||| | || || ||||| ||||| || | | ||||||||| Sbjct 11909 GCCATTTATTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTG 11850 Query 117152 ATCTCCAGGGACGAGG 117167 || |||||| |||| Sbjct 11849 ATTAGCAGGGATGAGG 11834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514993714317120