Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 158 1e-33
>seq15996
Length=6831
Score = 158 bits (174), Expect = 1e-33
Identities = 459/691 (66%), Gaps = 28/691 (4%)
Strand=Plus/Minus
Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334
||| | | ||||| || ||||||||||| || ||||| || || | |||||||||||
Sbjct 2372 GTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATC 2313
Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394
|||| || || ||| || ||||||| |||| || || || || | |||
Sbjct 2312 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTC 2253
Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454
|||||| ||| | | ||| || | ||||| | | | || || | ||
Sbjct 2252 CAGTCCAGCAGGTCGGTGGG--------CGTC-TTCTC--CCACAT-GTCGT---ACTGG 2208
Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514
| || ||| |||| |||||| | | ||||| || ||||| ||| ||||
Sbjct 2207 AGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCC 2148
Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATT-GAATAGTTGAC 133573
||||||||||| ||||||| ||||| |||| ||||| || |||| |||| ||| |
Sbjct 2147 AGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAAT-GTTCA- 2090
Query 133574 GAACCTG-GCATCGTCGCTATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAAC 133632
| | ||| || ||| ||| ||| | | | | | || | || ||||| |||||||
Sbjct 2089 GCAGCTGAGCCTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAAC 2030
Query 133633 CCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTC-GGCCGTG 133691
|||| | ||||| ||||| || | || || ||| | |||||| || ||| ||
Sbjct 2029 CCTGCACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTG 1970
Query 133692 GGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGT--CAAAT 133749
|| |||| ||||| ||||| |||||||| | || |||||| | ||| || ||||
Sbjct 1969 GG-TAGTAGTTGATTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACAAAC 1911
Query 133750 GTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAA 133809
| | || | ||||||| ||| || || | |||| || |||||| || |
Sbjct 1910 GCT--AGTTTTTTAAAGTCAAAAGTC--CGC-TCAGGGGTGACGTACATGTTGAGCGCGA 1856
Query 133810 TACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGC 133869
| ||| |||||||| || || ||| | ||| | |||| || || || | ||
Sbjct 1855 TGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGC 1796
Query 133870 AGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGAT 133929
|||||||||||| |||||||||||||| ||| | || ||||| | ||||| |
Sbjct 1795 AGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 1736
Query 133930 CCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960
| ||||| |||||||||||| ||||||||
Sbjct 1735 CTTTGTACAGCATGTACGGCGTACCGGTTTC 1705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433645280772304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |