Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq15996 158 1e-33 >seq15996 Length=6831 Score = 158 bits (174), Expect = 1e-33 Identities = 459/691 (66%), Gaps = 28/691 (4%) Strand=Plus/Minus Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 ||| | | ||||| || ||||||||||| || ||||| || || | ||||||||||| Sbjct 2372 GTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATC 2313 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 |||| || || ||| || ||||||| |||| || || || || | ||| Sbjct 2312 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTC 2253 Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454 |||||| ||| | | ||| || | ||||| | | | || || | || Sbjct 2252 CAGTCCAGCAGGTCGGTGGG--------CGTC-TTCTC--CCACAT-GTCGT---ACTGG 2208 Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514 | || ||| |||| |||||| | | ||||| || ||||| ||| |||| Sbjct 2207 AGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCC 2148 Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATT-GAATAGTTGAC 133573 ||||||||||| ||||||| ||||| |||| ||||| || |||| |||| ||| | Sbjct 2147 AGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAAT-GTTCA- 2090 Query 133574 GAACCTG-GCATCGTCGCTATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAAC 133632 | | ||| || ||| ||| ||| | | | | | || | || ||||| ||||||| Sbjct 2089 GCAGCTGAGCCTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAAC 2030 Query 133633 CCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTC-GGCCGTG 133691 |||| | ||||| ||||| || | || || ||| | |||||| || ||| || Sbjct 2029 CCTGCACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTG 1970 Query 133692 GGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGT--CAAAT 133749 || |||| ||||| ||||| |||||||| | || |||||| | ||| || |||| Sbjct 1969 GG-TAGTAGTTGATTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACAAAC 1911 Query 133750 GTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAA 133809 | | || | ||||||| ||| || || | |||| || |||||| || | Sbjct 1910 GCT--AGTTTTTTAAAGTCAAAAGTC--CGC-TCAGGGGTGACGTACATGTTGAGCGCGA 1856 Query 133810 TACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGC 133869 | ||| |||||||| || || ||| | ||| | |||| || || || | || Sbjct 1855 TGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGC 1796 Query 133870 AGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGAT 133929 |||||||||||| |||||||||||||| ||| | || ||||| | ||||| | Sbjct 1795 AGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 1736 Query 133930 CCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 | ||||| |||||||||||| |||||||| Sbjct 1735 CTTTGTACAGCATGTACGGCGTACCGGTTTC 1705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433645280772304