Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq730 100 3e-16 seq18807 96.9 4e-15 seq18806 96.9 4e-15 seq18046 96.9 4e-15 seq5454 89.7 6e-13 seq8721 86.0 7e-12 >seq730 Length=28029 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 6151 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 6210 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 6211 CTATACTAACGAGGA 6225 >seq18807 Length=3261 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || ||||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 177 TCTCCCCGTCAGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 236 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 237 ATACTAACGAGGACTG 252 >seq18806 Length=4747 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || ||||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 1747 TCTCCCCGTCAGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 1688 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 1687 ATACTAACGAGGACTG 1672 >seq18046 Length=8152 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 4166 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4225 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 4226 ATACTAACGAGGA 4238 >seq5454 Length=51032 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 33565 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 33624 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 33625 TACTAACGAGGA 33636 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 35365 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 35424 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 35425 TACTAACGAGGA 35436 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 36153 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 36212 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 36213 TACTAACGAGGA 36224 >seq8721 Length=66786 Score = 86.0 bits (94), Expect = 7e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 60445 CTCCCCGTCGGGGAATCGAACCC-GGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 60387 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 60386 TACTAACGAGGA 60375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571567344027360