Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq6507 235 4e-57 >seq6507 Length=50053 Score = 235 bits (260), Expect = 4e-57 Identities = 604/902 (67%), Gaps = 32/902 (4%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| || || |||||||||||||| |||||| ||||||||||| Sbjct 37457 CCTCTCAGTAAAGAAGAGAAGGATTTTCCCATTGCCTACTCCATGGTGATCCATGAGAAG 37516 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | ||||| || || |||||||| | || | ||||||||||| |||||||| Sbjct 37517 ATTGAGATGTTTGAGCGACTTCTGCGAGCTATTTACACTCCTCAGAACATCTACTGTGTG 37576 Query 107808 CACGTGGATGTGAAGTCCCCA-GAGACTTTCAAAGA-GGCGGTCAAGGCCATTATTTCCT 107865 || ||||| ||| ||| || ||| ||| |||| ||| || |||| ||| |||||| Sbjct 37577 CATGTGGACAAGAAATCCTCACAAGAATTT--AAGATGGCTGTGGAGGCAATTGTTTCCT 37634 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925 |||| || || || || | |||| || || | ||| | |||||||| |||||| Sbjct 37635 GCTTGCCTAACGTGTTTGTAGCCACTAGATTAGAAAGAGTGATATATGCCTCATGGTCCC 37694 Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-GTGCCA--TGGA 107982 | ||||| || || ||||||| ||| ||| |||| ||||||| || || |||| Sbjct 37695 GGGTGCAGGCAGATTTGAACTGCATGAGAGATCTGCT---GAGCTCACATGTCAAGTGGA 37751 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||| | || || || |||||||| ||||||||||| || |||||| ||||| | Sbjct 37752 GATACATGCTTAACACCTGCGGGACGGACTTCCCCATCAAAACCAATAGAGAGATAATTA 37811 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTC--TGAGTC 108100 || || ||| | || || | ||||| |||||||||||| ||| | ||| | Sbjct 37812 AGGTACTGAAGGCCCTCAATGGGAGAAACAGCATGGAGTCTGAG--ACCACCAATGACTA 37869 Query 108101 CaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAA 108160 |||||| || ||| | || | || || || || |||| | | || | Sbjct 37870 CAAAAAGGGCCGTTGGCAGTATCATTACGATGTCACTGACAGCGTCATCAGGACAGACGT 37929 Query 108161 GATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGC 108220 || ||| || || || || ||||||||| |||| ||||| || ||||||| Sbjct 37930 GAGGAAAAGTCCCCCACCCATTAGCAGCCCCATGTTCTCAGGAAATGCTTACTTTGTGGT 37989 Query 108221 CTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATG 108280 | | |||| ||||| ||||||| | || || | || | ||| | || || Sbjct 37990 CACCAGAGCTTTTGTGAAACATGTGATGGAGGACAGAGAGGTTCAGAAACTTTTGGAGTG 38049 Query 108281 GGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTG--CTC 108336 || || ||||| || ||||| || || ||| | |||||||| || | || || ||| Sbjct 38050 GGAGAAGGACACATACAGCCCTGATGAGCACTTGTGGGCCACGCTAATGAGGATGCCCTC 38109 Query 108337 CGTGGATGCCTGGCTCTGTTCCTAGCCA-CCCCAAGTATCACATCTCAGACATGACTGCC 108395 || | || || || | ||| || | | |||||| | | ||||||||| ||| Sbjct 38110 CG----TTCCCGGATCACTGCCT-GCTAGCATCAAGTACGATACGTCAGACATGCAGGCC 38164 Query 108396 ATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAG-CATGGGGGCGCCTTA 108454 | || | | || |||||| || | | |||||||| || ||| ||||| || || Sbjct 38165 TTTGCTCGTGTGGTGAAGTGGAGCTATGAAGCAGGAGATGTGAGACAT-GGGGCCCCGTA 38223 Query 108455 TGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTA 108514 || ||| |||| | | || || | || | ||||| ||||| ||||| Sbjct 38224 CTATCCTTGCACTGGTTCTTACAGAAGAGCAGTTTGTGTGTACGGAGCCGGTGACCTCAG 38283 Query 108515 CTGGATTCTCCAGAACC---ATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571 ||| |||| ||| | | || |||| ||||| |||||||| || | | ||||| Sbjct 38284 TTGG---CTCCTGAAACAAAAACATGTCTTTGCAAATAAGTTTGATCCTGAGATTGATGA 38340 Query 108572 TA 108573 || Sbjct 38341 TA 38342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348120190655688