Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq6507 235 4e-57
>seq6507
Length=50053
Score = 235 bits (260), Expect = 4e-57
Identities = 604/902 (67%), Gaps = 32/902 (4%)
Strand=Plus/Plus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || |||||||||||| || || |||||||||||||| |||||| |||||||||||
Sbjct 37457 CCTCTCAGTAAAGAAGAGAAGGATTTTCCCATTGCCTACTCCATGGTGATCCATGAGAAG 37516
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||| | ||||| || || |||||||| | || | ||||||||||| ||||||||
Sbjct 37517 ATTGAGATGTTTGAGCGACTTCTGCGAGCTATTTACACTCCTCAGAACATCTACTGTGTG 37576
Query 107808 CACGTGGATGTGAAGTCCCCA-GAGACTTTCAAAGA-GGCGGTCAAGGCCATTATTTCCT 107865
|| ||||| ||| ||| || ||| ||| |||| ||| || |||| ||| ||||||
Sbjct 37577 CATGTGGACAAGAAATCCTCACAAGAATTT--AAGATGGCTGTGGAGGCAATTGTTTCCT 37634
Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925
|||| || || || || | |||| || || | ||| | |||||||| ||||||
Sbjct 37635 GCTTGCCTAACGTGTTTGTAGCCACTAGATTAGAAAGAGTGATATATGCCTCATGGTCCC 37694
Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-GTGCCA--TGGA 107982
| ||||| || || ||||||| ||| ||| |||| ||||||| || || ||||
Sbjct 37695 GGGTGCAGGCAGATTTGAACTGCATGAGAGATCTGCT---GAGCTCACATGTCAAGTGGA 37751
Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042
||| | || || || |||||||| ||||||||||| || |||||| ||||| |
Sbjct 37752 GATACATGCTTAACACCTGCGGGACGGACTTCCCCATCAAAACCAATAGAGAGATAATTA 37811
Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTC--TGAGTC 108100
|| || ||| | || || | ||||| |||||||||||| ||| | ||| |
Sbjct 37812 AGGTACTGAAGGCCCTCAATGGGAGAAACAGCATGGAGTCTGAG--ACCACCAATGACTA 37869
Query 108101 CaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAA 108160
|||||| || ||| | || | || || || || |||| | | || |
Sbjct 37870 CAAAAAGGGCCGTTGGCAGTATCATTACGATGTCACTGACAGCGTCATCAGGACAGACGT 37929
Query 108161 GATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGC 108220
|| ||| || || || || ||||||||| |||| ||||| || |||||||
Sbjct 37930 GAGGAAAAGTCCCCCACCCATTAGCAGCCCCATGTTCTCAGGAAATGCTTACTTTGTGGT 37989
Query 108221 CTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATG 108280
| | |||| ||||| ||||||| | || || | || | ||| | || ||
Sbjct 37990 CACCAGAGCTTTTGTGAAACATGTGATGGAGGACAGAGAGGTTCAGAAACTTTTGGAGTG 38049
Query 108281 GGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTG--CTC 108336
|| || ||||| || ||||| || || ||| | |||||||| || | || || |||
Sbjct 38050 GGAGAAGGACACATACAGCCCTGATGAGCACTTGTGGGCCACGCTAATGAGGATGCCCTC 38109
Query 108337 CGTGGATGCCTGGCTCTGTTCCTAGCCA-CCCCAAGTATCACATCTCAGACATGACTGCC 108395
|| | || || || | ||| || | | |||||| | | ||||||||| |||
Sbjct 38110 CG----TTCCCGGATCACTGCCT-GCTAGCATCAAGTACGATACGTCAGACATGCAGGCC 38164
Query 108396 ATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAG-CATGGGGGCGCCTTA 108454
| || | | || |||||| || | | |||||||| || ||| ||||| || ||
Sbjct 38165 TTTGCTCGTGTGGTGAAGTGGAGCTATGAAGCAGGAGATGTGAGACAT-GGGGCCCCGTA 38223
Query 108455 TGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTA 108514
|| ||| |||| | | || || | || | ||||| ||||| |||||
Sbjct 38224 CTATCCTTGCACTGGTTCTTACAGAAGAGCAGTTTGTGTGTACGGAGCCGGTGACCTCAG 38283
Query 108515 CTGGATTCTCCAGAACC---ATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571
||| |||| ||| | | || |||| ||||| |||||||| || | | |||||
Sbjct 38284 TTGG---CTCCTGAAACAAAAACATGTCTTTGCAAATAAGTTTGATCCTGAGATTGATGA 38340
Query 108572 TA 108573
||
Sbjct 38341 TA 38342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348120190655688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |