Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 138 2e-27
seq8640 87.8 4e-12
>seq15996
Length=6831
Score = 138 bits (152), Expect = 2e-27
Identities = 389/593 (66%), Gaps = 7/593 (1%)
Strand=Plus/Plus
Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877
||| | ||||| | ||||| ||||||||| || || || | || || | |||||
Sbjct 937 TACAACTTCTTCGGCTTCAAGACGCTGGAGCGGTCCTACCTGTTGAAGATCAACGGCAAA 996
Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937
| | ||| || ||||||||| | ||| |||| |||||||||| ||||| |||
Sbjct 997 GTGGCGGAGCGTCCGCAGCACATGCTCATGAGAGTATCTGTCGGGATCCACAAAACGGAC 1056
Query 248938 ATAGAGAGCGTGC-TCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCAC 248996
|| || || | | |||||||||| | || || ||| | || || ||| |
Sbjct 1057 ATC-AGCGCAGCCATTGAGACGTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCTC 1115
Query 248997 ACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGC 249056
|| |||||||||||||| || ||| || |||||| | ||||| || || ||
Sbjct 1116 CCCCACGCTCTTCAACGCGGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGC 1175
Query 249057 CATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTC 249116
|||| | |||||| |||| |||||||| |||||||| || ||| || || ||
Sbjct 1176 CATGAAGGACGACAGCATCGAAGGCATTTACGACACGCTGAAGCAGTGTGCCCTCATCTC 1235
Query 249117 TAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACAT 249176
|| | || || |||||||| | | ||| | ||||||| ||| ||| |||||
Sbjct 1236 CAAGTCGGCCGGGGGAATCGGCGTGGCGGTCAGCTGCATCCGATCGACGGGGAGCTACAT 1295
Query 249177 CAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCAC 249236
| || || || || | | || |||| ||| | || || || | |||
Sbjct 1296 CGCCGGCACCAACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTCTACAACAACAC 1355
Query 249237 CGCCAGGTTCATCAACCAGGCCGGGCGCCGAAAG----GGGTCGTTCGCCATGTATTTGG 249292
|| | | | || |||||| ||| | | || || |||| |||||||| |||
Sbjct 1356 GGCGCGTTACGTCGACCAGG-GAGGCAACAAGAGGCCCGGAGCGTTTGCCATGTACCTGG 1414
Query 249293 AAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGC 249352
| |||||| ||| | || || |||||||| |||| ||||||| ||| || |||
Sbjct 1415 AGCCCTGGCACTTCGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACCGGAAAGGAGG 1474
Query 249353 TCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405
||| || | ||||| ||||||| | ||||| || ||||| ||||||||
Sbjct 1475 AGCAGAGGGCCAGAGACCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATG 1527
>seq8640
Length=62202
Score = 87.8 bits (96), Expect = 4e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261
||||| ||||||||| || | |||||||||||||||||| |||||||| | | || |||
Sbjct 58713 TGTCCTCCTTTCAAGATCATCATCCTGGACGAGGCGGACTCCATGACGTCAGCGGCTCAG 58654
Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321
|||| ||| | ||||| ||||| | | | ||| || || || ||||| | |||
Sbjct 58653 GCCGCTCTCAGGCGAACCATGGAAAAGGAGTCCCGCACCACCCGCTTCTGCCTCATCTGC 58594
Query 254322 AACTAC 254327
||||||
Sbjct 58593 AACTAC 58588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073284717788416
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |