Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq15996 138 2e-27 seq8640 87.8 4e-12 >seq15996 Length=6831 Score = 138 bits (152), Expect = 2e-27 Identities = 389/593 (66%), Gaps = 7/593 (1%) Strand=Plus/Plus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | ||||| | ||||| ||||||||| || || || | || || | ||||| Sbjct 937 TACAACTTCTTCGGCTTCAAGACGCTGGAGCGGTCCTACCTGTTGAAGATCAACGGCAAA 996 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 | | ||| || ||||||||| | ||| |||| |||||||||| ||||| ||| Sbjct 997 GTGGCGGAGCGTCCGCAGCACATGCTCATGAGAGTATCTGTCGGGATCCACAAAACGGAC 1056 Query 248938 ATAGAGAGCGTGC-TCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCAC 248996 || || || | | |||||||||| | || || ||| | || || ||| | Sbjct 1057 ATC-AGCGCAGCCATTGAGACGTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCTC 1115 Query 248997 ACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGC 249056 || |||||||||||||| || ||| || |||||| | ||||| || || || Sbjct 1116 CCCCACGCTCTTCAACGCGGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGC 1175 Query 249057 CATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTC 249116 |||| | |||||| |||| |||||||| |||||||| || ||| || || || Sbjct 1176 CATGAAGGACGACAGCATCGAAGGCATTTACGACACGCTGAAGCAGTGTGCCCTCATCTC 1235 Query 249117 TAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACAT 249176 || | || || |||||||| | | ||| | ||||||| ||| ||| ||||| Sbjct 1236 CAAGTCGGCCGGGGGAATCGGCGTGGCGGTCAGCTGCATCCGATCGACGGGGAGCTACAT 1295 Query 249177 CAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCAC 249236 | || || || || | | || |||| ||| | || || || | ||| Sbjct 1296 CGCCGGCACCAACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTCTACAACAACAC 1355 Query 249237 CGCCAGGTTCATCAACCAGGCCGGGCGCCGAAAG----GGGTCGTTCGCCATGTATTTGG 249292 || | | | || |||||| ||| | | || || |||| |||||||| ||| Sbjct 1356 GGCGCGTTACGTCGACCAGG-GAGGCAACAAGAGGCCCGGAGCGTTTGCCATGTACCTGG 1414 Query 249293 AAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGC 249352 | |||||| ||| | || || |||||||| |||| ||||||| ||| || ||| Sbjct 1415 AGCCCTGGCACTTCGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACCGGAAAGGAGG 1474 Query 249353 TCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 ||| || | ||||| ||||||| | ||||| || ||||| |||||||| Sbjct 1475 AGCAGAGGGCCAGAGACCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATG 1527 >seq8640 Length=62202 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 ||||| ||||||||| || | |||||||||||||||||| |||||||| | | || ||| Sbjct 58713 TGTCCTCCTTTCAAGATCATCATCCTGGACGAGGCGGACTCCATGACGTCAGCGGCTCAG 58654 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 |||| ||| | ||||| ||||| | | | ||| || || || ||||| | ||| Sbjct 58653 GCCGCTCTCAGGCGAACCATGGAAAAGGAGTCCCGCACCACCCGCTTCTGCCTCATCTGC 58594 Query 254322 AACTAC 254327 |||||| Sbjct 58593 AACTAC 58588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073284717788416