Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq15996 502 2e-137 seq25531 118 9e-22 >seq15996 Length=6831 Score = 502 bits (556), Expect = 2e-137 Identities = 1067/1582 (67%), Gaps = 29/1582 (2%) Strand=Plus/Minus Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAAT---TTTTAATCGTATCGTTCCACAAACC 22422 ||| ||||||||||| ||| ||||| | | || ||| ||| |||||| || Sbjct 2511 CTGAACGGACCCGTT---GTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGTCC 2455 Query 22423 GATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGAC 22482 | | |||| ||||||| ||| ||| | ||||| | |||||||| || || | || Sbjct 2454 CCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTCACTATCTGAAACTCTCCCGAGAGCAC 2395 Query 22483 GCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTG 22542 | ||| ||| |||||| ||| | | ||||| || || ||||| ||||| ||||| Sbjct 2394 CCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTG 2335 Query 22543 AGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGA 22602 ||||| || || || |||||||| |||| ||| || ||| |||| ||||||||| | Sbjct 2334 GGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGC 2275 Query 22603 AATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACAT 22662 || || ||| || | ||||||| ||| |||| |||||| || |||||||| Sbjct 2274 GATCTTCTCCTTCAGGGCCTTCCAGTCCAGCAGGTCGGTGGGCGTC---TTCTCCCACAT 2218 Query 22663 ATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATA 22722 ||||| || | | ||| || |||| |||||||||||| ||||| || || | Sbjct 2217 GTCGTACTGGAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCG-A 2159 Query 22723 TATC-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTT 22781 || ||||| || |||||||||||||||| ||| |||| || || ||||| ||||||| Sbjct 2158 GCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTT 2099 Query 22782 TCTTGTTCAATTCGGCGGCGGC--GACGCTTTCGTACGGCATACGCATCATCACGAACGC 22839 |||||| | || | | | | ||||||| |||| ||||| | | ||| || Sbjct 2098 GAATGTTCAG--CAGCTGAGCCTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGC 2041 Query 22840 GTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC 22899 ||| |||| |||||| ||||| || |||||||| | || | || ||| | || Sbjct 2040 GTCTGCCAAACCCTGCACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCTCCGC 1981 Query 22900 CTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTT 22959 || |||| || || | || ||||| | ||||||||||| || | | ||| Sbjct 1980 TTCAGGCACTGGGTAGTAGTTGATTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTT 1921 Query 22960 CGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT--GTACAACAAACTTGTTG 23017 || | | |||||| ||| | ||| | | || || ||||| Sbjct 1920 GGTCACAAACGCTAGTTTTTTAAAGTC--AAAAGTCCGCTCAGGGGTGACGTACATGTTG 1863 Query 23018 ACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATT 23077 | ||||| ||||| ||||| || || || ||||| || | | |||||||| || ||| Sbjct 1862 AGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATT 1803 Query 23078 TCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTG 23137 || || || || ||||| | || || ||||||| ||| ||||||||| || | ||| Sbjct 1802 TCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTG 1743 Query 23138 CACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCT 23197 || | || ||||| |||||||||||||| || || || ||| |||||||| || || Sbjct 1742 CAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGGCG 1683 Query 23198 CGCCACATAGTCTGAGCGTGAAC-ACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTG 23256 |||||| |||||| | || ||| ||| | ||| || || | ||| ||| | Sbjct 1682 TGCCACACCTGCTGAGCCTTCACCACG-CGCTTGACCCTCCCCTCCTTCTCATACGTGGT 1624 Query 23257 GTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACA 23316 ||||| | || || || | || | || ||| |||| ||||| | | ||||||| Sbjct 1623 GTACAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACA 1564 Query 23317 CATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAG 23376 ||| ||| ||| | || | || || | |||| || || || || ||||| | Sbjct 1563 CATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAT 1504 Query 23377 AGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAA 23436 |||||||| || || | ||| | | |||||| || ||||||||||| |||| |||| Sbjct 1503 GGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAG 1444 Query 23437 AAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTT 23496 ||||| |||||||| ||||| ||||| ||||| | ||||||||| || || ||||| Sbjct 1443 GAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTT 1384 Query 23497 ATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAG 23556 ||||| ||||| ||||||||||| |||||||||||||| ||||| ||||| || ||||| Sbjct 1383 GTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAG 1324 Query 23557 ACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTG-T 23612 |||||||| |||| ||| || | ||| || | | ||| | | | | Sbjct 1323 CCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTC---CCCGTCGATCGGATGCAGCT 1267 Query 23613 GAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGT 23672 || || | || || || ||| |||| || || || | || || || ||||| |||| Sbjct 1266 GACCG-CCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGT 1208 Query 23673 CGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCG 23732 |||| ||||| ||||||||||| || || | |||| || ||| || |||| || | Sbjct 1207 CGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTG 1148 Query 23733 CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACA 23792 || || | || ||| || || ||| |||||| || || | | ||||| Sbjct 1147 GCCTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGACA 1088 Query 23793 TTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGC 23852 || |||||||| || ||||| || |||||| | ||| || |||| | || | Sbjct 1087 GCAGGTTGTACGTCTCAATGGCTGCGCTGATGTCCGTTTTGTGGATCCCGACAGATACTC 1028 Query 23853 GCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAAC 23912 ||| | ||||| || || | ||| || |||||| || || ||||| || || | Sbjct 1027 TCATGAGCATGTGCTGCGGACGCTCCGCCACTTTGCCGTTGATCTTCAACAGGTAGGACC 968 Query 23913 GTTGCATCGTTTTAAATCCAAA 23934 | | || ||| || || || || Sbjct 967 GCTCCAGCGTCTTGAAGCCGAA 946 >seq25531 Length=26544 Score = 118 bits (130), Expect = 9e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 ||| || |||||| |||||||||||||| || || || |||||||| | || || || Sbjct 22092 CACTTCATCTTTGCTTGTGTACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGT 22151 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||||| || | ||||| | ||||||||||||||||| ||||| Sbjct 22152 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGT 22211 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || ||||| ||| ||||| ||||| || ||||| Sbjct 22212 ACCGGTCTCTGTCTGAGACTCAATGATGGCGTACCACA 22249 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || ||| |||| || || || || ||||| | ||| ||||||| || | ||| | Sbjct 22600 TTTCCACTCGTTTCATGAAGAGGTCTGGGATCCACATGGCGAAGAACAGGTCTCTGGCCC 22659 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||||||||| || |||||||| ||||| || | ||||| ||||| || ||||| Sbjct 22660 TCTGCTCCTCTTTACCTGTGTTCTTCTTCAACTCTAGGAAGTCAAACACATCGAAATGCC 22719 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || || || || || ||||||| Sbjct 22720 ACGGCTCCAGGTACACAGCGAAGGCCCCGGGTCTCT 22755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445571310335040