Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 502 2e-137
seq25531 118 9e-22
>seq15996
Length=6831
Score = 502 bits (556), Expect = 2e-137
Identities = 1067/1582 (67%), Gaps = 29/1582 (2%)
Strand=Plus/Minus
Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAAT---TTTTAATCGTATCGTTCCACAAACC 22422
||| ||||||||||| ||| ||||| | | || ||| ||| |||||| ||
Sbjct 2511 CTGAACGGACCCGTT---GTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGTCC 2455
Query 22423 GATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGAC 22482
| | |||| ||||||| ||| ||| | ||||| | |||||||| || || | ||
Sbjct 2454 CCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTCACTATCTGAAACTCTCCCGAGAGCAC 2395
Query 22483 GCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTG 22542
| ||| ||| |||||| ||| | | ||||| || || ||||| ||||| |||||
Sbjct 2394 CCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTG 2335
Query 22543 AGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGA 22602
||||| || || || |||||||| |||| ||| || ||| |||| ||||||||| |
Sbjct 2334 GGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGC 2275
Query 22603 AATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACAT 22662
|| || ||| || | ||||||| ||| |||| |||||| || ||||||||
Sbjct 2274 GATCTTCTCCTTCAGGGCCTTCCAGTCCAGCAGGTCGGTGGGCGTC---TTCTCCCACAT 2218
Query 22663 ATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATA 22722
||||| || | | ||| || |||| |||||||||||| ||||| || || |
Sbjct 2217 GTCGTACTGGAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCG-A 2159
Query 22723 TATC-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTT 22781
|| ||||| || |||||||||||||||| ||| |||| || || ||||| |||||||
Sbjct 2158 GCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTT 2099
Query 22782 TCTTGTTCAATTCGGCGGCGGC--GACGCTTTCGTACGGCATACGCATCATCACGAACGC 22839
|||||| | || | | | | ||||||| |||| ||||| | | ||| ||
Sbjct 2098 GAATGTTCAG--CAGCTGAGCCTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGC 2041
Query 22840 GTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC 22899
||| |||| |||||| ||||| || |||||||| | || | || ||| | ||
Sbjct 2040 GTCTGCCAAACCCTGCACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCTCCGC 1981
Query 22900 CTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTT 22959
|| |||| || || | || ||||| | ||||||||||| || | | |||
Sbjct 1980 TTCAGGCACTGGGTAGTAGTTGATTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTT 1921
Query 22960 CGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT--GTACAACAAACTTGTTG 23017
|| | | |||||| ||| | ||| | | || || |||||
Sbjct 1920 GGTCACAAACGCTAGTTTTTTAAAGTC--AAAAGTCCGCTCAGGGGTGACGTACATGTTG 1863
Query 23018 ACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATT 23077
| ||||| ||||| ||||| || || || ||||| || | | |||||||| || |||
Sbjct 1862 AGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATT 1803
Query 23078 TCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTG 23137
|| || || || ||||| | || || ||||||| ||| ||||||||| || | |||
Sbjct 1802 TCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTG 1743
Query 23138 CACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCT 23197
|| | || ||||| |||||||||||||| || || || ||| |||||||| || ||
Sbjct 1742 CAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGGCG 1683
Query 23198 CGCCACATAGTCTGAGCGTGAAC-ACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTG 23256
|||||| |||||| | || ||| ||| | ||| || || | ||| ||| |
Sbjct 1682 TGCCACACCTGCTGAGCCTTCACCACG-CGCTTGACCCTCCCCTCCTTCTCATACGTGGT 1624
Query 23257 GTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACA 23316
||||| | || || || | || | || ||| |||| ||||| | | |||||||
Sbjct 1623 GTACAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACA 1564
Query 23317 CATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAG 23376
||| ||| ||| | || | || || | |||| || || || || ||||| |
Sbjct 1563 CATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAT 1504
Query 23377 AGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAA 23436
|||||||| || || | ||| | | |||||| || ||||||||||| |||| ||||
Sbjct 1503 GGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAG 1444
Query 23437 AAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTT 23496
||||| |||||||| ||||| ||||| ||||| | ||||||||| || || |||||
Sbjct 1443 GAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTT 1384
Query 23497 ATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAG 23556
||||| ||||| ||||||||||| |||||||||||||| ||||| ||||| || |||||
Sbjct 1383 GTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAG 1324
Query 23557 ACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTG-T 23612
|||||||| |||| ||| || | ||| || | | ||| | | | |
Sbjct 1323 CCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTC---CCCGTCGATCGGATGCAGCT 1267
Query 23613 GAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGT 23672
|| || | || || || ||| |||| || || || | || || || ||||| ||||
Sbjct 1266 GACCG-CCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGT 1208
Query 23673 CGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCG 23732
|||| ||||| ||||||||||| || || | |||| || ||| || |||| || |
Sbjct 1207 CGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTG 1148
Query 23733 CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACA 23792
|| || | || ||| || || ||| |||||| || || | | |||||
Sbjct 1147 GCCTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGACA 1088
Query 23793 TTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGC 23852
|| |||||||| || ||||| || |||||| | ||| || |||| | || |
Sbjct 1087 GCAGGTTGTACGTCTCAATGGCTGCGCTGATGTCCGTTTTGTGGATCCCGACAGATACTC 1028
Query 23853 GCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAAC 23912
||| | ||||| || || | ||| || |||||| || || ||||| || || |
Sbjct 1027 TCATGAGCATGTGCTGCGGACGCTCCGCCACTTTGCCGTTGATCTTCAACAGGTAGGACC 968
Query 23913 GTTGCATCGTTTTAAATCCAAA 23934
| | || ||| || || || ||
Sbjct 967 GCTCCAGCGTCTTGAAGCCGAA 946
>seq25531
Length=26544
Score = 118 bits (130), Expect = 9e-22
Identities = 121/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106
||| || |||||| |||||||||||||| || || || |||||||| | || || ||
Sbjct 22092 CACTTCATCTTTGCTTGTGTACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGT 22151
Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166
||||| ||| ||||||||| || | ||||| | ||||||||||||||||| |||||
Sbjct 22152 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGT 22211
Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204
|| ||||| ||| ||||| ||||| || |||||
Sbjct 22212 ACCGGTCTCTGTCTGAGACTCAATGATGGCGTACCACA 22249
Score = 111 bits (122), Expect = 1e-19
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399
|||| || ||| |||| || || || || ||||| | ||| ||||||| || | ||| |
Sbjct 22600 TTTCCACTCGTTTCATGAAGAGGTCTGGGATCCACATGGCGAAGAACAGGTCTCTGGCCC 22659
Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459
| ||||||||| || |||||||| ||||| || | ||||| ||||| || |||||
Sbjct 22660 TCTGCTCCTCTTTACCTGTGTTCTTCTTCAACTCTAGGAAGTCAAACACATCGAAATGCC 22719
Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
||||||| ||||| || || || || || |||||||
Sbjct 22720 ACGGCTCCAGGTACACAGCGAAGGCCCCGGGTCTCT 22755
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445571310335040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |