Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 457 1e-123
>seq15996
Length=6831
Score = 457 bits (506), Expect = 1e-123
Identities = 1269/1943 (65%), Gaps = 21/1943 (1%)
Strand=Plus/Minus
Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384
||||| ||||| || |||| | | ||||| || | || | || || || || ||
Sbjct 2480 TTCTTCATCTCCTCGCTCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTC 2421
Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444
|||| || || ||||| || | || || || ||||| || || ||||| || | |||
Sbjct 2420 ACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 2361
Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504
| ||||| || || |||| || || || || || || || ||||| || |||| ||
Sbjct 2360 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 2301
Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564
| || || || | |||| | ||| || || || || | ||| | | ||
Sbjct 2300 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTCCAGTCCAGCAGG 2241
Query 62565 TCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTA 62617
|| | || | | ||| || || || || || || ||| |
Sbjct 2240 TCGGTGGGCGTCTTCTCCCACATGTCG-------TACTGGAGGATGCCCTTGCTGACCGG 2188
Query 62618 CGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAA 62677
|| ||| | || || || || || || || | || || | || |||||||| |
Sbjct 2187 AGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAG 2128
Query 62678 TGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATC 62737
|| |||| || ||||| |||||||| | | || || || || || ||||| ||
Sbjct 2127 GGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTC 2068
Query 62738 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797
|| || || | ||| || || ||||| || || || || || || || ||||| ||
Sbjct 2067 GAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATTCCGATCGG 2008
Query 62798 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62857
|| || | ||| || || | || ||||| || | || || || || || || |||||
Sbjct 2007 CCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTGATTTCGATAAT 1948
Query 62858 TTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT-- 62915
|| || | ||| |||| || |||||| |||| | ||||| ||| |||||
Sbjct 1947 CTTGTTCAAGTTTTTGACGATGACTTTGGTCACAAACGCTAGTTTTTTAAAGTCAAAAGT 1888
Query 62916 -CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTC 62974
||| || | || ||||||| | || | || |||||||||||||| ||||||||
Sbjct 1887 CCGCTCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTC 1828
Query 62975 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAA 63034
|| | | || | | ||| || ||||| || || || | ||||| || || |
Sbjct 1827 ATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAG 1768
Query 63035 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGT 63094
||| || || || ||||| |||| || || || || || || ||| | || ||||| ||
Sbjct 1767 ATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGT 1708
Query 63095 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTA 63154
||| |||| || || ||||| || | ||| || ||||||| | | |||
Sbjct 1707 TTCCGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTGAC 1648
Query 63155 TCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63214
|||| || | || || || |||| |||||||| || ||||| | |||
Sbjct 1647 CCTCCCCTCCTTCTCATACGTGGTGTACAGCTTCTCGAACTCCTCCCCCCAGCACTCGTC 1588
Query 63215 CAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63274
|| | || || || | ||||||||||| ||||| ||| || || ||||| ||
Sbjct 1587 CAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTT 1528
Query 63275 CATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGT 63333
||| || || || || ||||| | || || ||| || ||||| | || || ||||| |
Sbjct 1527 CATGAACAGGTCGGGGATCCACATGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCT 1469
Query 63334 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63393
|||| || ||||| || || || ||||| | | | || | ||||| || |||| ||
Sbjct 1468 TTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGT 1409
Query 63394 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63453
| ||||| | |||| |||| ||||| |||||||| || | ||| | || ||||| |
Sbjct 1408 ACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGT 1349
Query 63454 TATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGC 63513
| || ||||||| ||| || | | ||||| || | || ||||| |||| ||| ||||
Sbjct 1348 TGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGC 1289
Query 63514 CTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63573
|| | | || || || | | | || |||||||| ||| || ||||| |
Sbjct 1288 TCCCCGTCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGA 1229
Query 63574 ATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTA 63633
|| || | || | |||||| || |||||||| ||||| || || ||||| || |
Sbjct 1228 GGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCA 1169
Query 63634 GAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63693
| || ||||| |||| || | | | |||||||| || || | || || || ||||
Sbjct 1168 GGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGT 1109
Query 63694 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63753
| || ||||| || || || || || |||||||||||||| |||| | || ||| ||
Sbjct 1108 GGGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGCTGATGTCCGTTT 1049
Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGT 63813
|| || || || | || | ||| | ||||||||| || | || | | |||| ||
Sbjct 1048 TGTGGATCCCGACAGATACTCTCATGAGCATGTGCTGCGGACGCTCCGCCACTTTGCCGT 989
Query 63814 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63873
| || ||||||| |||||| |||| || || || || || ||||||| || || |
Sbjct 988 TGATCTTCAACAGGTAGGACCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAAT 929
Query 63874 CTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGG 63933
| || ||| | || || | || ||||| || || | | | ||| || || | |
Sbjct 928 CGCGGTCGAAGATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGCG 869
Query 63934 TAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA 63992
| | ||| || || || ||||| || | ||| || || | |||||| | |
Sbjct 868 T-CTCCTTGGAGATCATGGGAGAGTGGCGTCTATTCAAGGGGTTGATGTAGTTGTACAGG 810
Query 63993 TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATT 64052
||||||||||| ||||| || | || || || || ||||| || ||||| | ||| ||
Sbjct 809 TCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATC 750
Query 64053 CTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCT 64112
| || || || ||||| || || || |||| || || ||||| || || || ||
Sbjct 749 CGTGCAGCGAGGATGGCGTAGTCGGGGTGTTTGGTTGTGAGGGTGGCGGCGATCTCTGCG 690
Query 64113 GCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATA 64172
||||| ||||| | || || ||||| || || | || | || || || ||||||||
Sbjct 689 GCCAGCGTGTCGAGCTCCACGGTTGTGACGCCGCTGTACAAACCCTGGATCACCTTCATC 630
Query 64173 GCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGA 64232
| || | | ||||| | | || | ||| | || ||||||| || || |||
Sbjct 629 GTAATCTGGGTCGGATCCACAAAGTCAGGGTTCAGCCCGTAGCACAGCTTCTGGATGCGA 570
Query 64233 GACGTGATTTTATCAAACATGAC 64255
|||||||||||||| ||||||||
Sbjct 569 GACGTGATTTTATCGAACATGAC 547
Score = 96.9 bits (106), Expect = 4e-15
Identities = 124/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172
|||| ||||| || ||||| || || |||||| || | || || || || ||||| |
Sbjct 3268 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCGGCGATGTGGATGT 3209
Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232
||| ||| || || || ||||||||||| || | ||| || ||||| || | || ||||
Sbjct 3208 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCGGCCATCTTGAGTATGGTCT 3149
Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283
| || | |||||||| | |||||||| | |||| | ||| || ||||
Sbjct 3148 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCAGGAA 3098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629541960327360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |