Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq15996 109 5e-19 >seq15996 Length=6831 Score = 109 bits (120), Expect = 5e-19 Identities = 845/1353 (62%), Gaps = 19/1353 (1%) Strand=Plus/Minus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 ||||| ||||| || | |||||| ||||| || | || || | || || || ||||| Sbjct 2432 AGGTGAGGATTCACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTG 2373 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || | ||| |||||||| || || | | || || | || || || || ||||| Sbjct 2372 GTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATC 2313 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | || ||||| || |||| || || | || ||| || || | ||| Sbjct 2312 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTC 2253 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || ||| | || || || |||| |||||| || || || || || || || || Sbjct 2252 CAGTCCAGCAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTG 2193 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCT---AGTTCGCAACTA 37419 | ||||| | | || ||||| || || ||| | | ||| || ||||| || Sbjct 2192 ACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCG---AGCTCAGCGGCCAGCTCGCAGCTC 2136 Query 37420 GATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCT 37479 | || || ||||| || || || || || || ||||| || || | | | || || Sbjct 2135 GCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCG 2076 Query 37480 TCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATA 37539 ||| ||||| | |||| || | || || | || ||||||||||| || ||||| Sbjct 2075 GGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATT 2016 Query 37540 CCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATA 37599 || || || || || ||| || || | || ||| |||||| || || ||||| Sbjct 2015 CCGATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTGATT 1956 Query 37600 TCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA- 37658 || || || || || | ||||| || | | ||| || | | | | | || | || Sbjct 1955 TCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCA-CAAACGCTAGTTTTTTAAA 1897 Query 37659 --CATAAATACG-TTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATAC 37715 || || | || | | | || | | | | || || || | |||||||| || Sbjct 1896 GTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACAC 1837 Query 37716 AGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAAT 37775 || || ||||| ||| | | | | | || ||||| ||||| || || | | || Sbjct 1836 CGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGAT 1777 Query 37776 TGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGG 37835 || |||| ||| || ||| || | || || | ||||| || || || ||||| Sbjct 1776 GGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGG 1717 Query 37836 CGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGA 37894 ||| || ||| | || | ||||||||| | | ||| | || || || || || | Sbjct 1716 CGTACCGGTTTCCGTCTGGGACTCGATAATGGCGTGCCA-CACCTGCTGAGCCTTCACCA 1658 Query 37895 TCGC-TTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCC 37953 ||| || | | || | || || | || | || | || || | |||| Sbjct 1657 -CGCGCTTGACCCTCCCCTCCTTCTCATACGTGGTGTACAGCTTCTCGAACTCCTCCCCC 1599 Query 37954 CATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTT 38013 || ||| | || || || ||| |||||||| |||||||| |||| | | Sbjct 1598 CAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTC 1539 Query 38014 TCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCT 38072 || || | | ||| || | || || | ||| ||| ||| || | ||| ||| || Sbjct 1538 TCCACTCTCTTCATGAACAGGTCGGGGATCCA-CATGGCGTAGAAAAGGTCTCTGGCCCT 1480 Query 38073 ATATTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCC 38131 | || || || || ||| ||||| |||| || || || || | || ||||| Sbjct 1479 CTGCTCCTCCTTTCCGGTGTTC-TTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCC 1421 Query 38132 ATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATC 38191 | || || | || || | | ||||| || || || | |||||||| | | || | Sbjct 1420 AGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAAC 1361 Query 38192 TAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATAC 38251 | ||||| || || | ||| | ||| || || | || || || |||||||| | | Sbjct 1360 GCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGC 1301 Query 38252 CGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCAT 38311 ||| || || | ||| | | ||| || || | || || || ||||| || || Sbjct 1300 CGGCGATGTAGCTCCCCGTCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGGCCG 1241 Query 38312 GTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCT 38371 || || || | || || || || | ||| || | || ||||| || ||||| |||| Sbjct 1240 ACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCT 1181 Query 38372 TTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATG 38431 | || | || | || || || |||| || ||| ||||| ||||| || | | Sbjct 1180 TCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCG 1121 Query 38432 TAGGAGATGCATGTATGAACCATTTTTCCGACA 38464 | || || || || ||||||| || ||||||| Sbjct 1120 TGGGGGAGGCGTGGGTGAACCACTTCTCCGACA 1088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468319750121280