Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 109 5e-19
>seq15996
Length=6831
Score = 109 bits (120), Expect = 5e-19
Identities = 845/1353 (62%), Gaps = 19/1353 (1%)
Strand=Plus/Minus
Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182
||||| ||||| || | |||||| ||||| || | || || | || || || |||||
Sbjct 2432 AGGTGAGGATTCACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTG 2373
Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242
|| || | ||| |||||||| || || | | || || | || || || || |||||
Sbjct 2372 GTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATC 2313
Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302
|| || | || ||||| || |||| || || | || ||| || || | |||
Sbjct 2312 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTC 2253
Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362
|| ||| | || || || |||| |||||| || || || || || || || ||
Sbjct 2252 CAGTCCAGCAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTG 2193
Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCT---AGTTCGCAACTA 37419
| ||||| | | || ||||| || || ||| | | ||| || ||||| ||
Sbjct 2192 ACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCG---AGCTCAGCGGCCAGCTCGCAGCTC 2136
Query 37420 GATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCT 37479
| || || ||||| || || || || || || ||||| || || | | | || ||
Sbjct 2135 GCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCG 2076
Query 37480 TCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATA 37539
||| ||||| | |||| || | || || | || ||||||||||| || |||||
Sbjct 2075 GGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATT 2016
Query 37540 CCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATA 37599
|| || || || || ||| || || | || ||| |||||| || || |||||
Sbjct 2015 CCGATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTGATT 1956
Query 37600 TCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA- 37658
|| || || || || | ||||| || | | ||| || | | | | | || | ||
Sbjct 1955 TCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCA-CAAACGCTAGTTTTTTAAA 1897
Query 37659 --CATAAATACG-TTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATAC 37715
|| || | || | | | || | | | | || || || | |||||||| ||
Sbjct 1896 GTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACAC 1837
Query 37716 AGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAAT 37775
|| || ||||| ||| | | | | | || ||||| ||||| || || | | ||
Sbjct 1836 CGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGAT 1777
Query 37776 TGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGG 37835
|| |||| ||| || ||| || | || || | ||||| || || || |||||
Sbjct 1776 GGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGG 1717
Query 37836 CGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGA 37894
||| || ||| | || | ||||||||| | | ||| | || || || || || |
Sbjct 1716 CGTACCGGTTTCCGTCTGGGACTCGATAATGGCGTGCCA-CACCTGCTGAGCCTTCACCA 1658
Query 37895 TCGC-TTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCC 37953
||| || | | || | || || | || | || | || || | ||||
Sbjct 1657 -CGCGCTTGACCCTCCCCTCCTTCTCATACGTGGTGTACAGCTTCTCGAACTCCTCCCCC 1599
Query 37954 CATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTT 38013
|| ||| | || || || ||| |||||||| |||||||| |||| | |
Sbjct 1598 CAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTC 1539
Query 38014 TCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCT 38072
|| || | | ||| || | || || | ||| ||| ||| || | ||| ||| ||
Sbjct 1538 TCCACTCTCTTCATGAACAGGTCGGGGATCCA-CATGGCGTAGAAAAGGTCTCTGGCCCT 1480
Query 38073 ATATTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCC 38131
| || || || || ||| ||||| |||| || || || || | || |||||
Sbjct 1479 CTGCTCCTCCTTTCCGGTGTTC-TTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCC 1421
Query 38132 ATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATC 38191
| || || | || || | | ||||| || || || | |||||||| | | || |
Sbjct 1420 AGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAAC 1361
Query 38192 TAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATAC 38251
| ||||| || || | ||| | ||| || || | || || || |||||||| | |
Sbjct 1360 GCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGC 1301
Query 38252 CGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCAT 38311
||| || || | ||| | | ||| || || | || || || ||||| || ||
Sbjct 1300 CGGCGATGTAGCTCCCCGTCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGGCCG 1241
Query 38312 GTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCT 38371
|| || || | || || || || | ||| || | || ||||| || ||||| ||||
Sbjct 1240 ACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCT 1181
Query 38372 TTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATG 38431
| || | || | || || || |||| || ||| ||||| ||||| || | |
Sbjct 1180 TCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCG 1121
Query 38432 TAGGAGATGCATGTATGAACCATTTTTCCGACA 38464
| || || || || ||||||| || |||||||
Sbjct 1120 TGGGGGAGGCGTGGGTGAACCACTTCTCCGACA 1088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468319750121280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |