Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq15996 491 6e-134 >seq15996 Length=6831 Score = 491 bits (544), Expect = 6e-134 Identities = 1281/1940 (66%), Gaps = 15/1940 (1%) Strand=Plus/Minus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 ||||| ||||| || |||| | | ||||| || | || | || || || ||||| Sbjct 2480 TTCTTCATCTCCTCGCTCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTC 2421 Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116 |||| ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 2420 ACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 2361 Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176 | || || || || |||| || || || || || ||||| ||||| || |||| || Sbjct 2360 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 2301 Query 79177 AAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGA 79236 | || || || | |||| ||| || || || || | | ||| ||| || Sbjct 2300 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTCCAGTCCAGCAGG 2241 Query 79237 TCAGACGG-GACAACATTCCAAAGATCATATTGTAGAATACCGTTACT-AGCGTATGATC 79294 || | || | | | | ||| | || || || || || || || || | || | || | Sbjct 2240 TCGGTGGGCGTCTTC-TCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGA-GAGC 2183 Query 79295 CTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTC 79354 || ||| || || || || || || |||| | || || |||||||| | || Sbjct 2182 CTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 2123 Query 79355 CGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATG 79414 |||| || ||||| || || || | | || || || || || |||| || || | Sbjct 2122 CGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTCGAACG 2063 Query 79415 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 79474 | || | ||| || || |||||||| || || || || || || ||||| || || | Sbjct 2062 GGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATTCCGATCGGCCTGT 2003 Query 79475 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 79534 | | ||| || || | || ||||| || | || || || || || || ||||| || | Sbjct 2002 GGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTGATTTCGATAATCTTGT 1943 Query 79535 TGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAAT---CGTC 79591 | | || |||| || |||||| |||| | |||||| ||| ||||| || Sbjct 1942 TCAAGTTTTTGACGATGACTTTGGTCACAAACGCTAGTTTTTTAAAGTCAAAAGTCCGCT 1883 Query 79592 CATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAG 79651 || | || ||||||| | ||||| || ||||||||||| || |||||||||| Sbjct 1882 CAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGT 1823 Query 79652 CATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTT 79711 | | || | | |||||| ||||||||||| || | || ||||| || | ||| | Sbjct 1822 CGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCT 1763 Query 79712 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAA 79771 | || || ||||| |||| || || || || || || ||| |||| ||||| ||||| Sbjct 1762 GCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCG 1703 Query 79772 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCT 79831 |||| || || ||||| || | ||| || ||||||| | | |||| ||| Sbjct 1702 TCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTGACCCTCC 1643 Query 79832 TTTCTCTTTCGTA--TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAA 79889 || | || || | ||||| | || |||||||| || ||||| ||||| | Sbjct 1642 CCTCCTTCTCATACGTGGTGTACAGCTTC--TCGAACTCCTCCCCCCAGCACTCGTCCAG 1585 Query 79890 TCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCAT 79949 || || || |||| |||||||||| ||||| ||| | || |||| ||||| Sbjct 1584 CCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCAT 1525 Query 79950 AAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 80008 || || || || ||||| | || || ||| || ||||||| || |||||||| |||| Sbjct 1524 GAACAGGTCGGGGATCCACATGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTTTC 1466 Query 80009 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 80068 | || ||||| || || || ||||| | | | || | ||||| || |||| ||| | Sbjct 1465 CGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACA 1406 Query 80069 TGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 80128 |||| | |||| || | ||||| |||||||| || | ||| | || ||||| || | Sbjct 1405 TGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGT 1346 Query 80129 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTC 80188 | ||||||| ||| || | | || ||||| | || ||||| |||| ||| ||||| | Sbjct 1345 AGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCC 1286 Query 80189 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 | | | || || || | | | || |||||||| ||| || ||||| | | Sbjct 1285 CCGTCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGG 1226 Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308 | || | || | ||| || || ||||| || ||||| || || ||||| || || | Sbjct 1225 CACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGA 1166 Query 80309 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 80368 | ||||| |||| || | | | |||||||| || || | || || || ||||| | Sbjct 1165 AGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGG 1106 Query 80369 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGAT 80428 | ||||| || || ||||| || |||||||||||||| |||| || ||| || | Sbjct 1105 TGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGCTGATGTCCGTTTTGT 1046 Query 80429 GAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTA 80488 | || || || | || | ||| | ||||||||| || | || | | ||| || | Sbjct 1045 GGATCCCGACAGATACTCTCATGAGCATGTGCTGCGGACGCTCCGCCACTTTGCCGTTGA 986 Query 80489 TTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 80548 | ||||||| ||| || |||| || || || || || ||||||| || || || | Sbjct 985 TCTTCAACAGGTAGGACCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCGC 926 Query 80549 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGA 80608 | ||| | || || | |||||||| || || | | | ||| | || | || Sbjct 925 GGTCGAAGATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGCGT-C 867 Query 80609 TACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCC 80667 | ||| || || || ||||| || | ||| || || | |||||| | | ||| Sbjct 866 TCCTTGGAGATCATGGGAGAGTGGCGTCTATTCAAGGGGTTGATGTAGTTGTACAGGTCC 807 Query 80668 TCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTG 80727 |||||||| ||||| || | || || || || ||||| || ||||| ||||| || | Sbjct 806 TCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATCCGT 747 Query 80728 GCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCC 80787 || || | ||||| || || || |||| || || ||||| || || || || ||| Sbjct 746 GCAGCGAGGATGGCGTAGTCGGGGTGTTTGGTTGTGAGGGTGGCGGCGATCTCTGCGGCC 687 Query 80788 AGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCT 80847 || ||||| | || || ||||| || || | || | || ||||| |||||||| | Sbjct 686 AGCGTGTCGAGCTCCACGGTTGTGACGCCGCTGTACAAACCCTGGATCACCTTCATCGTA 627 Query 80848 ATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGAC 80907 || | | ||||| | | |||| ||| | || || || | || || |||||| Sbjct 626 ATCTGGGTCGGATCCACAAAGTCAGGGTTCAGCCCGTAGCACAGCTTCTGGATGCGAGAC 567 Query 80908 GTGATTTTATCAAACATGAC 80927 ||||||||||| |||||||| Sbjct 566 GTGATTTTATCGAACATGAC 547 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||| || || |||||| || | || || || || ||||| | Sbjct 3268 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCGGCGATGTGGATGT 3209 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| ||| || || || ||||||||||| || | ||| || ||||| || | || |||| Sbjct 3208 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCGGCCATCTTGAGTATGGTCT 3149 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | |||||||| | |||| | ||| || |||| Sbjct 3148 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCAGGAA 3098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717954449659680