Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 464 8e-126
seq25531 95.1 2e-14
>seq15996
Length=6831
Score = 464 bits (514), Expect = 8e-126
Identities = 1273/1942 (66%), Gaps = 19/1942 (1%)
Strand=Plus/Minus
Query 71080 TTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139
|| || ||||| || |||| | | ||||| || | || | || || ||||||||
Sbjct 2480 TTCTTCATCTCCTCGCTCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTC 2421
Query 71140 ACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCC 71199
|||| ||||| ||||| || | || || || ||||| || || ||||| || | |||
Sbjct 2420 ACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 2361
Query 71200 ACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 71259
| ||||| || || |||| || || || || || || || ||||| || |||| ||
Sbjct 2360 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 2301
Query 71260 AGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAA 71317
|| || || || | || ||| | || || || || || || | | ||| | | |
Sbjct 2300 AGGCTGTTCCTCACGCC--GTGCTTGGCGATCTTCTCCTTCAGGGCCTTCCAGTCCAGCA 2243
Query 71318 GATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGAT 71376
| || | || ||||| || || | || | ||
Sbjct 2242 GGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGA-GAG 2184
Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436
||| | || || ||||| || || | |||| || || || |||||||| | ||
Sbjct 2183 CCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCG 2124
Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496
| || || ||||| || || || | | || || || || || ||||| || ||
Sbjct 2123 GCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTCGAAC 2064
Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556
|| || | ||| || || |||||||| || || || ||||| || ||||| || |||
Sbjct 2063 GGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATTCCGATCGGCCTG 2004
Query 71557 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 71616
|| | ||| || || | || ||||| || | || || || || || || ||||| ||
Sbjct 2003 TGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTGATTTCGATAATCTTG 1944
Query 71617 TTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCA 71676
|| | ||| |||| || |||||| |||| | |||||| ||| ||||| |||
Sbjct 1943 TTCAAGTTTTTGACGATGACTTTGGTCACAAACGCTAGTTTTTTAAAGTCAAAAGTCCGC 1884
Query 71677 TCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTA 71733
|| | || ||| ||| | || | || ||||||||||| || ||||||||||
Sbjct 1883 TCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCG 1824
Query 71734 GCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 71793
| || || | | ||||| ||||| || || || | |||||||| || | |||
Sbjct 1823 TCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTC 1764
Query 71794 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCA 71853
|| || || ||||| |||| || || || || || || || |||| ||||| |||||
Sbjct 1763 TGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCC 1704
Query 71854 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTC 71913
|||| || || ||||| || | ||| || ||||||| | | |||| |||
Sbjct 1703 GTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTGACCCTC 1644
Query 71914 TTTTCTCTTTCGTA--TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCT 71970
|| | || || | ||||| | || |||||||| || ||||| ||| | |||
Sbjct 1643 CCCTCCTTCTCATACGTGGTGTACAGCTTC--TCGAACTCCTCCCCCCA-GCACTCGTCC 1587
Query 71971 AATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTC 72030
| || || || || ||||||||||||| ||||| ||| | | |||| |||
Sbjct 1586 AGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTC 1527
Query 72031 ATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTT 72089
|| || || || || ||||| | || || ||| || ||||||| || |||||||| ||
Sbjct 1526 ATGAACAGGTCGGGGATCCACATGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTT 1468
Query 72090 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149
||| || ||||| || || || ||||| | | | || | ||||| || |||| |||
Sbjct 1467 TCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTA 1408
Query 72150 TATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 72209
||||| | |||| |||| ||||| |||||||| || | ||| | || ||||| ||
Sbjct 1407 CATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTT 1348
Query 72210 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 72269
|| ||||||| ||| || | | || ||||| || ||||| |||| ||| |||||
Sbjct 1347 GTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCT 1288
Query 72270 TCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329
|| | | || || ||| | | | || |||||||| ||| || ||||| |
Sbjct 1287 CCCCGTCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAG 1228
Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389
|| || | || | ||| || || ||||| || || || || ||| ||||| || ||
Sbjct 1227 GGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAG 1168
Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449
|| ||||| |||| || | | | |||||||| || || | || || || |||||
Sbjct 1167 GAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTG 1108
Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 72509
|| ||||| || || ||||| || |||||||||||||| |||| || ||| ||
Sbjct 1107 GGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGCTGATGTCCGTTTT 1048
Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATT 72569
|| || || || | || | ||| | ||| ||||| || | || | | ||| ||
Sbjct 1047 GTGGATCCCGACAGATACTCTCATGAGCATGTGCTGCGGACGCTCCGCCACTTTGCCGTT 988
Query 72570 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 72629
|| ||||||| |||||| |||| || || || || || ||||||| || || ||
Sbjct 987 GATCTTCAACAGGTAGGACCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATC 928
Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGT 72689
|| ||| | || || | || ||||| || || | | | ||| || || | ||
Sbjct 927 GCGGTCGAAGATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGCGT 868
Query 72690 GATACTTGAA-ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAAT 72748
| |||| | || || ||||| || | ||| || || | |||||| | | |
Sbjct 867 C-TCCTTGGAGATCATGGGAGAGTGGCGTCTATTCAAGGGGTTGATGTAGTTGTACAGGT 809
Query 72749 CCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTC 72808
|||||||||| ||||| || | || || || || ||||| || ||||| ||||| || |
Sbjct 808 CCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATCC 749
Query 72809 TGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTG 72868
|| || || ||||| || || || |||| || || ||||| || || ||||| |
Sbjct 748 GTGCAGCGAGGATGGCGTAGTCGGGGTGTTTGGTTGTGAGGGTGGCGGCGATCTCTGCGG 689
Query 72869 CCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 72928
|||| ||||| | || || ||||| || || | || | || ||||| |||||||| |
Sbjct 688 CCAGCGTGTCGAGCTCCACGGTTGTGACGCCGCTGTACAAACCCTGGATCACCTTCATCG 629
Query 72929 CTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAG 72988
|| | | ||||| | | |||| ||| | || || || | || || ||||
Sbjct 628 TAATCTGGGTCGGATCCACAAAGTCAGGGTTCAGCCCGTAGCACAGCTTCTGGATGCGAG 569
Query 72989 ACGTGATTTTATCAAACATAAC 73010
||||||||||||| ||||| ||
Sbjct 568 ACGTGATTTTATCGAACATGAC 547
Score = 105 bits (116), Expect = 9e-18
Identities = 126/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
|||| ||||| || ||||| || || |||||| ||| | || ||||| ||||| || |
Sbjct 3268 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCGGCGATGTGGATGT 3209
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
||| ||||| || || ||||||||||| || | ||| || ||||| || | || ||||
Sbjct 3208 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCGGCCATCTTGAGTATGGTCT 3149
Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038
| || | |||||||| | |||||||| | |||| | ||| || ||||
Sbjct 3148 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCAGGAA 3098
>seq25531
Length=26544
Score = 95.1 bits (104), Expect = 2e-14
Identities = 124/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820
|||| |||| ||| || || || ||||| || || || || || |||| || || || |
Sbjct 24318 CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCAATTCGTGCAGCCAGGA 24377
Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880
||||| || ||||||| || || ||||| || ||||||||||||| |||||||
Sbjct 24378 GTGCATAGTCGGGATGTTTGGTGGTGAGGGTGGCGGCGGTTTCTGCTGCCAGTGTGTCCA 24437
Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTAT 72932
|| || || || || ||| | || | || ||||| |||||||| | |||
Sbjct 24438 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCATTGTTAT 24489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670845475929120
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