Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq15996 464 8e-126 seq25531 95.1 2e-14 >seq15996 Length=6831 Score = 464 bits (514), Expect = 8e-126 Identities = 1273/1942 (66%), Gaps = 19/1942 (1%) Strand=Plus/Minus Query 71080 TTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139 || || ||||| || |||| | | ||||| || | || | || || |||||||| Sbjct 2480 TTCTTCATCTCCTCGCTCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTC 2421 Query 71140 ACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCC 71199 |||| ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 2420 ACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 2361 Query 71200 ACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 71259 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 2360 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 2301 Query 71260 AGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTTTTAGAGATTCCCAATTCCAAA 71317 || || || || | || ||| | || || || || || || | | ||| | | | Sbjct 2300 AGGCTGTTCCTCACGCC--GTGCTTGGCGATCTTCTCCTTCAGGGCCTTCCAGTCCAGCA 2243 Query 71318 GATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGAT 71376 | || | || ||||| || || | || | || Sbjct 2242 GGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGA-GAG 2184 Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436 ||| | || || ||||| || || | |||| || || || |||||||| | || Sbjct 2183 CCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCG 2124 Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496 | || || ||||| || || || | | || || || || || ||||| || || Sbjct 2123 GCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTCGAAC 2064 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556 || || | ||| || || |||||||| || || || ||||| || ||||| || ||| Sbjct 2063 GGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATTCCGATCGGCCTG 2004 Query 71557 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 71616 || | ||| || || | || ||||| || | || || || || || || ||||| || Sbjct 2003 TGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTGATTTCGATAATCTTG 1944 Query 71617 TTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCA 71676 || | ||| |||| || |||||| |||| | |||||| ||| ||||| ||| Sbjct 1943 TTCAAGTTTTTGACGATGACTTTGGTCACAAACGCTAGTTTTTTAAAGTCAAAAGTCCGC 1884 Query 71677 TCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTA 71733 || | || ||| ||| | || | || ||||||||||| || |||||||||| Sbjct 1883 TCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCG 1824 Query 71734 GCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 71793 | || || | | ||||| ||||| || || || | |||||||| || | ||| Sbjct 1823 TCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTC 1764 Query 71794 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCA 71853 || || || ||||| |||| || || || || || || || |||| ||||| ||||| Sbjct 1763 TGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCC 1704 Query 71854 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTC 71913 |||| || || ||||| || | ||| || ||||||| | | |||| ||| Sbjct 1703 GTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTGACCCTC 1644 Query 71914 TTTTCTCTTTCGTA--TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCT 71970 || | || || | ||||| | || |||||||| || ||||| ||| | ||| Sbjct 1643 CCCTCCTTCTCATACGTGGTGTACAGCTTC--TCGAACTCCTCCCCCCA-GCACTCGTCC 1587 Query 71971 AATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTC 72030 | || || || || ||||||||||||| ||||| ||| | | |||| ||| Sbjct 1586 AGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTC 1527 Query 72031 ATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTT 72089 || || || || || ||||| | || || ||| || ||||||| || |||||||| || Sbjct 1526 ATGAACAGGTCGGGGATCCACATGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTT 1468 Query 72090 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 ||| || ||||| || || || ||||| | | | || | ||||| || |||| ||| Sbjct 1467 TCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTA 1408 Query 72150 TATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 72209 ||||| | |||| |||| ||||| |||||||| || | ||| | || ||||| || Sbjct 1407 CATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTT 1348 Query 72210 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 72269 || ||||||| ||| || | | || ||||| || ||||| |||| ||| ||||| Sbjct 1347 GTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCT 1288 Query 72270 TCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 || | | || || ||| | | | || |||||||| ||| || ||||| | Sbjct 1287 CCCCGTCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAG 1228 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 || || | || | ||| || || ||||| || || || || ||| ||||| || || Sbjct 1227 GGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAG 1168 Query 72390 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 || ||||| |||| || | | | |||||||| || || | || || || ||||| Sbjct 1167 GAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTG 1108 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTG 72509 || ||||| || || ||||| || |||||||||||||| |||| || ||| || Sbjct 1107 GGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGCTGATGTCCGTTTT 1048 Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATT 72569 || || || || | || | ||| | ||| ||||| || | || | | ||| || Sbjct 1047 GTGGATCCCGACAGATACTCTCATGAGCATGTGCTGCGGACGCTCCGCCACTTTGCCGTT 988 Query 72570 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 72629 || ||||||| |||||| |||| || || || || || ||||||| || || || Sbjct 987 GATCTTCAACAGGTAGGACCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATC 928 Query 72630 TCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGT 72689 || ||| | || || | || ||||| || || | | | ||| || || | || Sbjct 927 GCGGTCGAAGATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGCGT 868 Query 72690 GATACTTGAA-ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAAT 72748 | |||| | || || ||||| || | ||| || || | |||||| | | | Sbjct 867 C-TCCTTGGAGATCATGGGAGAGTGGCGTCTATTCAAGGGGTTGATGTAGTTGTACAGGT 809 Query 72749 CCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTC 72808 |||||||||| ||||| || | || || || || ||||| || ||||| ||||| || | Sbjct 808 CCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATCC 749 Query 72809 TGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTG 72868 || || || ||||| || || || |||| || || ||||| || || ||||| | Sbjct 748 GTGCAGCGAGGATGGCGTAGTCGGGGTGTTTGGTTGTGAGGGTGGCGGCGATCTCTGCGG 689 Query 72869 CCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 72928 |||| ||||| | || || ||||| || || | || | || ||||| |||||||| | Sbjct 688 CCAGCGTGTCGAGCTCCACGGTTGTGACGCCGCTGTACAAACCCTGGATCACCTTCATCG 629 Query 72929 CTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAG 72988 || | | ||||| | | |||| ||| | || || || | || || |||| Sbjct 628 TAATCTGGGTCGGATCCACAAAGTCAGGGTTCAGCCCGTAGCACAGCTTCTGGATGCGAG 569 Query 72989 ACGTGATTTTATCAAACATAAC 73010 ||||||||||||| ||||| || Sbjct 568 ACGTGATTTTATCGAACATGAC 547 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||| || || |||||| ||| | || ||||| ||||| || | Sbjct 3268 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCGGCGATGTGGATGT 3209 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| || || ||||||||||| || | ||| || ||||| || | || |||| Sbjct 3208 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCGGCCATCTTGAGTATGGTCT 3149 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | |||||||| | |||| | ||| || |||| Sbjct 3148 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCAGGAA 3098 >seq25531 Length=26544 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| |||| ||| || || || ||||| || || || || || |||| || || || | Sbjct 24318 CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCAATTCGTGCAGCCAGGA 24377 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||| || ||||||| || || ||||| || ||||||||||||| ||||||| Sbjct 24378 GTGCATAGTCGGGATGTTTGGTGGTGAGGGTGGCGGCGGTTTCTGCTGCCAGTGTGTCCA 24437 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTAT 72932 || || || || || ||| | || | || ||||| |||||||| | ||| Sbjct 24438 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCATTGTTAT 24489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670845475929120