Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq15996 116 5e-21 seq25531 96.9 5e-15 seq5155 89.7 8e-13 >seq15996 Length=6831 Score = 116 bits (128), Expect = 5e-21 Identities = 342/525 (65%), Gaps = 18/525 (3%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||||| ||| || || || || ||||| ||| | ||||| | | | || Sbjct 1303 ACCAACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTCTACAACAACACGGCGCGT 1362 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||| ||||| || |||| || || | ||| | ||| |||| || ||| Sbjct 1363 TACGTCGACCAGGGAGGCAACAAGAGGCCCGGAGCGTTTGCCATGTACCTGGAGCCCTGG 1422 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||| ||||| |||||||| | ||| || || ||| | || || ||| | Sbjct 1423 CACTTCGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACCGGAAAGGAGGAGCAGAGG 1482 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------C 97040 ||||| ||| | || || || | ||| | || || ||||||||||| | || | Sbjct 1483 GCCAGAGACCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGC 1542 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 ||| | | ||||| || ||||| || || || ||||| ||| ||| ||| Sbjct 1543 AACCAAG------ACTGGTCTCTGATGTGTCCGAACGAGTGCCCCGGGCTGGACGAGTGC 1596 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGA 97160 ||||| || ||||| ||| |||||| | || ||| | ||||| || || | Sbjct 1597 TGGGGGGAGGAGTTCGAGAAGCTGTACACCACGTATGAGAAGGAGGG--GA-GGGTCAAG 1653 Query 97161 CGAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217 || || | | || | | ||||| | ||||| | | | ||| || || || Sbjct 1654 CGCGTGGTGAAGGCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACGGAAACCGGT 1713 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277 || |||||||| || ||||| || || || | || |||||||| | | ||||| Sbjct 1714 ACGCCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGC 1773 Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 |||||||| || ||| || ||||| ||||| || |||||| || Sbjct 1774 ACCATCAAAAGCAGCAACCTCTGCACAGAAATAGTTGAGTACACC 1818 >seq25531 Length=26544 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 |||||| | |||||| | | ||||| |||||| || || || ||||| ||||||||| Sbjct 22250 CTGTGGTACGCCATCATTGAGTCTCAGACAGAGACCGGTACGCCTTACATGCTCTACAAG 22191 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 || || || | || |||||||| | | ||||||||||||| | ||||||| Sbjct 22190 GACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTG 22131 Query 97299 TGCACGGAAATTGTAGAGTAC 97319 |||||||| |||||||||||| Sbjct 22130 TGCACGGAGATTGTAGAGTAC 22110 >seq5155 Length=28601 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 127444 AATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGT 127503 || |||||||||||||| ||||||||||| || || || |||||||| ||||| || || Sbjct 7766 AAGCCGTGCGTCAGGTGACCTCCGTCGGGAAGGTCCAGCCCCATGATCCTACCATGGGGC 7707 Query 127504 TTAACGATTCCAGTGTACACGGCAAAGTTGGC 127535 | |||||| | ||||| || |||||||| || Sbjct 7706 TCAACGATGGCCGTGTAGACAGCAAAGTTAGC 7675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740734875441120