Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 116 5e-21
seq25531 96.9 5e-15
seq5155 89.7 8e-13
>seq15996
Length=6831
Score = 116 bits (128), Expect = 5e-21
Identities = 342/525 (65%), Gaps = 18/525 (3%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866
|| ||||||||| ||| || || || || ||||| ||| | ||||| | | | ||
Sbjct 1303 ACCAACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTCTACAACAACACGGCGCGT 1362
Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926
||||| ||||| ||||| || |||| || || | ||| | ||| |||| || |||
Sbjct 1363 TACGTCGACCAGGGAGGCAACAAGAGGCCCGGAGCGTTTGCCATGTACCTGGAGCCCTGG 1422
Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986
||| ||||| |||||||| | ||| || || ||| | || || ||| |
Sbjct 1423 CACTTCGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACCGGAAAGGAGGAGCAGAGG 1482
Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------C 97040
||||| ||| | || || || | ||| | || || ||||||||||| | || |
Sbjct 1483 GCCAGAGACCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGC 1542
Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100
||| | | ||||| || ||||| || || || ||||| ||| ||| |||
Sbjct 1543 AACCAAG------ACTGGTCTCTGATGTGTCCGAACGAGTGCCCCGGGCTGGACGAGTGC 1596
Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGA 97160
||||| || ||||| ||| |||||| | || ||| | ||||| || || |
Sbjct 1597 TGGGGGGAGGAGTTCGAGAAGCTGTACACCACGTATGAGAAGGAGGG--GA-GGGTCAAG 1653
Query 97161 CGAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217
|| || | | || | | ||||| | ||||| | | | ||| || || ||
Sbjct 1654 CGCGTGGTGAAGGCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACGGAAACCGGT 1713
Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277
|| |||||||| || ||||| || || || | || |||||||| | | |||||
Sbjct 1714 ACGCCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGC 1773
Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322
|||||||| || ||| || ||||| ||||| || |||||| ||
Sbjct 1774 ACCATCAAAAGCAGCAACCTCTGCACAGAAATAGTTGAGTACACC 1818
>seq25531
Length=26544
Score = 96.9 bits (106), Expect = 5e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238
|||||| | |||||| | | ||||| |||||| || || || ||||| |||||||||
Sbjct 22250 CTGTGGTACGCCATCATTGAGTCTCAGACAGAGACCGGTACGCCTTACATGCTCTACAAG 22191
Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298
|| || || | || |||||||| | | ||||||||||||| | |||||||
Sbjct 22190 GACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTG 22131
Query 97299 TGCACGGAAATTGTAGAGTAC 97319
|||||||| ||||||||||||
Sbjct 22130 TGCACGGAGATTGTAGAGTAC 22110
>seq5155
Length=28601
Score = 89.7 bits (98), Expect = 8e-13
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 127444 AATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGT 127503
|| |||||||||||||| ||||||||||| || || || |||||||| ||||| || ||
Sbjct 7766 AAGCCGTGCGTCAGGTGACCTCCGTCGGGAAGGTCCAGCCCCATGATCCTACCATGGGGC 7707
Query 127504 TTAACGATTCCAGTGTACACGGCAAAGTTGGC 127535
| |||||| | ||||| || |||||||| ||
Sbjct 7706 TCAACGATGGCCGTGTAGACAGCAAAGTTAGC 7675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740734875441120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |