Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq27843 116 3e-21 >seq27843 Length=4971 Score = 116 bits (128), Expect = 3e-21 Identities = 133/177 (75%), Gaps = 9/177 (5%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||||| |||||||| || || || | ||||||||||||||| ||||| ||||| ||||| Sbjct 2952 CATGTTTGTGTACTCGGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCCAGGTC 3011 Query 25833 TCCATCTTCCC----TGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGG 25888 || || || | |||| || || || |||| ||||| | ||| || |||| Sbjct 3012 GCCTTCCTCTCGATCTGTG----AACCCGAGGTTGTCCAGGAAGTCCCGGGACCCGTTGG 3067 Query 25889 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 25945 | ||||||||||| ||||| ||| | ||||||||||||| ||||| || || |||| Sbjct 3068 CATCCCAGATCTTCACCCCTTTCGCCGAGAGCTCTTTGGCATTTGTTGATCC-CTGA 3123 Score = 109 bits (120), Expect = 4e-19 Identities = 121/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| || || || |||||||| || || || || ||||||| ||||| Sbjct 1818 GCGATCATGTAGGTAAGAAGTGCATAGCTGGCAATATTGAAAGGCACCCCGAGGCCCATA 1877 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || ||| || | |||||| ||||||||||| ||||| |||| | |||||| |||||||| Sbjct 1878 TCACCC-GAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACACACGTAGAACTGACA 1936 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCT 25665 || || || ||| || || ||||| || || || |||| Sbjct 1937 CAGGGCGTGGCAGGGGGGCAGAGCCATGTGGGGCATGTCT 1976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339992460309876