Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq27843 116 3e-21
>seq27843
Length=4971
Score = 116 bits (128), Expect = 3e-21
Identities = 133/177 (75%), Gaps = 9/177 (5%)
Strand=Plus/Plus
Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832
||||| |||||||| || || || | ||||||||||||||| ||||| ||||| |||||
Sbjct 2952 CATGTTTGTGTACTCGGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCCAGGTC 3011
Query 25833 TCCATCTTCCC----TGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGG 25888
|| || || | |||| || || || |||| ||||| | ||| || ||||
Sbjct 3012 GCCTTCCTCTCGATCTGTG----AACCCGAGGTTGTCCAGGAAGTCCCGGGACCCGTTGG 3067
Query 25889 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 25945
| ||||||||||| ||||| ||| | ||||||||||||| ||||| || || ||||
Sbjct 3068 CATCCCAGATCTTCACCCCTTTCGCCGAGAGCTCTTTGGCATTTGTTGATCC-CTGA 3123
Score = 109 bits (120), Expect = 4e-19
Identities = 121/160 (76%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565
|| |||||||| || || || |||||||| || || || || ||||||| |||||
Sbjct 1818 GCGATCATGTAGGTAAGAAGTGCATAGCTGGCAATATTGAAAGGCACCCCGAGGCCCATA 1877
Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625
|| ||| || | |||||| ||||||||||| ||||| |||| | |||||| ||||||||
Sbjct 1878 TCACCC-GAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACACACGTAGAACTGACA 1936
Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCT 25665
|| || || ||| || || ||||| || || || ||||
Sbjct 1937 CAGGGCGTGGCAGGGGGGCAGAGCCATGTGGGGCATGTCT 1976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 339992460309876
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |