Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq289 154 2e-32 seq27640 122 1e-22 >seq289 Length=55552 Score = 154 bits (170), Expect = 2e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 ||||| || | || |||||| || ||||| |||||||| |||||||| | |||||| Sbjct 25454 TTGACAATGTCGAAGCCCACGGTGCCACCGAATGTGCTGGGCTTCCAGTACTCTGGGGAG 25395 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| ||| |||| | ||| |||||||| | || ||||||| ||| | || || Sbjct 25394 CAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATCGTC 25335 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || |||||||| || || | ||| || |||||||| | ||| | ||| | ||||||| Sbjct 25334 TCCCCAAAGATGGCATTAGGCCTGGGTTTCTCCACCAACAGTCCTGGGTAGAGCTCCACA 25275 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || ||||||| ||| || | || ||| | || || ||||| |||||||||| Sbjct 25274 GCGTCGATGTGTCCATACATCTCCTCGAGCACTGCGGCCATTTCTTTTTCTCCTG 25220 Score = 100 bits (110), Expect = 4e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 ||||| | ||||| || | ||||| || || |||||| ||| || || || | Sbjct 23695 CCGATCAGAATGAGCCGTGAAGTCTGGAAAAGCCTTTCGTCGTCCCAGTCAGGGTGGACC 23636 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 ||||| || || ||||| | ||||||||||| |||||||| || ||||||||||| Sbjct 23635 TCCTTCAGCACTTCACACACCCGGTTGTGTTCCCGTAGCCAGATCGTGGCGTACATCATC 23576 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 ||||| || |||||||| || ||||| || || ||||| Sbjct 23575 AGACCGGGGACCAGGCCGAACGCCTCGTGGCCCACAGC 23538 >seq27640 Length=19633 Score = 122 bits (134), Expect = 1e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||||||| | || || ||||| || |||||||| || |||||||| | |||||| Sbjct 8476 TTGACGATACTGAAGCCAGTCTCTCCCCCAAAGGTGCTCGGCTTCCAGTACTCAGGGGAG 8535 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| ||| ||| |||||||| ||||| || |||||||||| ||| | || ||| Sbjct 8536 CAGATGGGGTTTCCCAGCAGGCCTTTCAGGGAGAATGGAGCCCCCATCTCAACCATACTC 8595 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 ||||| || ||| | || || || | |||||| | || | || | ||| ||||||| | Sbjct 8596 TCACCAAATATGCCATTAGGGCGTGCCTTTTCTAGTAAAAGGCCAGGGTAAAACTCCAAA 8655 Query 8921 GCCTCGATGTCTCCGTAAAG 8940 || || || || || || || Sbjct 8656 GCATCTATATCACCATAGAG 8675 Score = 120 bits (132), Expect = 4e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821 ||||| || |||||||| || |||||||| | |||||||||||| ||| ||| ||| Sbjct 17741 TCTCCCCCAAAGGTGCTCGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTTCCCAGCAGG 17800 Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881 ||||| ||||| || |||||||| | ||| | || |||||||| || ||| | | | | Sbjct 17801 CCTTTCAGGGAGAAGGGAGCCCCGATCTCAACCATACTCTCACCAAATATGCTGCTAGAA 17860 Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 || | || |||| || || |||| ||| ||||||| ||| || ||||| || || || Sbjct 17861 CGTGTTTTCTCCAACAGGATACCGGGGTAAAACTCCAAAGCATCTATGTCACCATAGAG 17919 Score = 104 bits (114), Expect = 3e-17 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || |||||||| |||| | ||||| || || || || || ||| |||||| Sbjct 9570 TCACCAATAATGATAAGTCTGGCAGTCTGGAAGAGCTGCTCATCGTCCCAGGTGGGATGT 9629 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| ||||| | || ||||||||||| || || || ||||| || || |||||||| Sbjct 9630 TCTGACTTCAGGATGTCACACACTCTGTTATGCTCTCTCAGCCATATGGTGGCGTACATG 9689 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||||| || | | |||||| ||| ||||| | | |||||||| | | | || Sbjct 9690 GTGAGACCCGGTAGGATGCCAAATATCTCCTGACCAATAACCAGACGCTTCTCTGGAGGG 9749 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | |||||| | ||||||||| |||| || || | || || ||||| ||| Sbjct 9750 ACACCTTCAGGATACACCATGTGCACAGGGACCTCAGATACTGTTGGAGGGTACATCTCA 9809 Query 9850 CC 9851 || Sbjct 9810 CC 9811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708214714121280