Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq289 154 2e-32
seq27640 122 1e-22
>seq289
Length=55552
Score = 154 bits (170), Expect = 2e-32
Identities = 175/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800
||||| || | || |||||| || ||||| |||||||| |||||||| | ||||||
Sbjct 25454 TTGACAATGTCGAAGCCCACGGTGCCACCGAATGTGCTGGGCTTCCAGTACTCTGGGGAG 25395
Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860
|||||| ||| |||| | ||| |||||||| | || ||||||| ||| | || ||
Sbjct 25394 CAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATCGTC 25335
Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920
|| || |||||||| || || | ||| || |||||||| | ||| | ||| | |||||||
Sbjct 25334 TCCCCAAAGATGGCATTAGGCCTGGGTTTCTCCACCAACAGTCCTGGGTAGAGCTCCACA 25275
Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
|| ||||||| ||| || | || ||| | || || ||||| ||||||||||
Sbjct 25274 GCGTCGATGTGTCCATACATCTCCTCGAGCACTGCGGCCATTTCTTTTTCTCCTG 25220
Score = 100 bits (110), Expect = 4e-16
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672
||||| | ||||| || | ||||| || || |||||| ||| || || || |
Sbjct 23695 CCGATCAGAATGAGCCGTGAAGTCTGGAAAAGCCTTTCGTCGTCCCAGTCAGGGTGGACC 23636
Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732
||||| || || ||||| | ||||||||||| |||||||| || |||||||||||
Sbjct 23635 TCCTTCAGCACTTCACACACCCGGTTGTGTTCCCGTAGCCAGATCGTGGCGTACATCATC 23576
Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770
||||| || |||||||| || ||||| || || |||||
Sbjct 23575 AGACCGGGGACCAGGCCGAACGCCTCGTGGCCCACAGC 23538
>seq27640
Length=19633
Score = 122 bits (134), Expect = 1e-22
Identities = 147/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800
|||||||| | || || ||||| || |||||||| || |||||||| | ||||||
Sbjct 8476 TTGACGATACTGAAGCCAGTCTCTCCCCCAAAGGTGCTCGGCTTCCAGTACTCAGGGGAG 8535
Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860
|||||| ||| ||| |||||||| ||||| || |||||||||| ||| | || |||
Sbjct 8536 CAGATGGGGTTTCCCAGCAGGCCTTTCAGGGAGAATGGAGCCCCCATCTCAACCATACTC 8595
Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920
||||| || ||| | || || || | |||||| | || | || | ||| ||||||| |
Sbjct 8596 TCACCAAATATGCCATTAGGGCGTGCCTTTTCTAGTAAAAGGCCAGGGTAAAACTCCAAA 8655
Query 8921 GCCTCGATGTCTCCGTAAAG 8940
|| || || || || || ||
Sbjct 8656 GCATCTATATCACCATAGAG 8675
Score = 120 bits (132), Expect = 4e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821
||||| || |||||||| || |||||||| | |||||||||||| ||| ||| |||
Sbjct 17741 TCTCCCCCAAAGGTGCTCGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTTCCCAGCAGG 17800
Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881
||||| ||||| || |||||||| | ||| | || |||||||| || ||| | | | |
Sbjct 17801 CCTTTCAGGGAGAAGGGAGCCCCGATCTCAACCATACTCTCACCAAATATGCTGCTAGAA 17860
Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940
|| | || |||| || || |||| ||| ||||||| ||| || ||||| || || ||
Sbjct 17861 CGTGTTTTCTCCAACAGGATACCGGGGTAAAACTCCAAAGCATCTATGTCACCATAGAG 17919
Score = 104 bits (114), Expect = 3e-17
Identities = 168/242 (69%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669
|| || |||||||| |||| | ||||| || || || || || ||| ||||||
Sbjct 9570 TCACCAATAATGATAAGTCTGGCAGTCTGGAAGAGCTGCTCATCGTCCCAGGTGGGATGT 9629
Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729
||| ||||| | || ||||||||||| || || || ||||| || || ||||||||
Sbjct 9630 TCTGACTTCAGGATGTCACACACTCTGTTATGCTCTCTCAGCCATATGGTGGCGTACATG 9689
Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789
||||||| || | | |||||| ||| ||||| | | |||||||| | | | ||
Sbjct 9690 GTGAGACCCGGTAGGATGCCAAATATCTCCTGACCAATAACCAGACGCTTCTCTGGAGGG 9749
Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849
|| | |||||| | ||||||||| |||| || || | || || ||||| |||
Sbjct 9750 ACACCTTCAGGATACACCATGTGCACAGGGACCTCAGATACTGTTGGAGGGTACATCTCA 9809
Query 9850 CC 9851
||
Sbjct 9810 CC 9811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708214714121280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |