Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq471 89.7 5e-13 seq4563 86.0 6e-12 >seq471 Length=23154 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | ||||| || || | || || || | |||||| | || | || | Sbjct 16638 CAAGATGCAGATCTTTGTGAAGACCCTCACCGGTAAGACCATCACCCTGGAGGTGGAGCC 16697 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | ||||||||||||| | |||||| ||||| || || || || || || || || Sbjct 16698 CAGCGACACCATCGAGAACGTCAAAGCTAAGATCCAGGATAAGGAGGGAATCCCCCCGGA 16757 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || || || || || | || ||||||||| || ||||| | | | || |||||| Sbjct 16758 CCAGCAGAGGCTGATCTTCGCCGGCAAACAGCTGGAAGACGGCCGCACTCTCTCCGACTA 16817 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 ||||| || || || || || |||| ||||| || | || || |||||||| Sbjct 16818 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGGAAA 16871 >seq4563 Length=103851 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 71716 TGAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGAC 71775 |||||| || || || || | | | | ||||||||||||||||||||||| |||||||| Sbjct 70380 TGAGGGGAAGATGCATGGTTTCTTGAGGATGTACTGGGCCAAAAAGATTCTGGAGTGGAC 70439 Query 71776 TCAAACTCCCGAGCAGGCGCTC-GAGTATTCTATTTATCTAAACGATAGATACAGTCTCG 71834 | | |||||| |||||||| | || || | || ||||||||| | || || | Sbjct 70440 TTCTTCACCCGAGGAGGCGCTCTCAATA-GCTCTGTACCTAAACGATCGCTATGAGCTGG 70498 Query 71835 ACGGTCGCGATCCTAACGGTTATGTCGGT 71863 | || | |||||||| || | ||||||| Sbjct 70499 ATGGCCAGGATCCTAATGGCTTTGTCGGT 70527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478452913400640