Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq15996 172 1e-37 >seq15996 Length=6831 Score = 172 bits (190), Expect = 1e-37 Identities = 599/925 (65%), Gaps = 16/925 (2%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||| | |||||| ||||| |||||||| | ||||| || | | | || Sbjct 946 TTCGGCTTCAAGACGCTGGAGCGGTCCTACCTGTTGAAGATCAACGGCAAAGTGGCGGAG 1005 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || |||||||| ||| | ||| | || || | || ||||| |||| | || Sbjct 1006 CGTCCGCAGCACATGCTCATGAGAGTATCTGTCGGGATCCACAAAACGGACATCAGCGCA 1065 Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCTC-GTGTATTCACGCACGCCACGCCAACAAT 363569 || ||||| || || || || || | ||| ||||| |||||| | || || | Sbjct 1066 GCCATTGAGACGTACAACCTGCTGTCGGAGAAGTGG-TTCACCCACGCCTCCCCCACGCT 1124 Query 363570 GTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGA 363629 | ||| || ||||| | |||||| |||| ||||| || || |||||||| Sbjct 1125 CTTCAACGCGGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGA 1184 Query 363630 CGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGC 363689 ||| |||||| || || | ||||| || ||| | ||||| || || |||||| || Sbjct 1185 CGACAGCATCGAAGGCATTTACGACACGCTGAAGCAGTGTGCCCTCATCTCCAAGTCGGC 1244 Query 363690 AGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCAC 363749 || ||||| || || || || | | || | | || ||||| |||||| Sbjct 1245 CGGGGGAATCGGCGTGGCGGTCAGCTGCATCCGATCGACGGGGAGCTACATCGCCGGCAC 1304 Query 363750 AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTA 363809 || |||| || ||||| || |||||||| | || | |||| || ||| | || Sbjct 1305 CAACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTCTACAACAACACGGCGCGTTA 1364 Query 363810 CGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCA 363869 |||||||||||| || ||| | || |||||||| ||||| || ||||| || Sbjct 1365 CGTCGACCAGGGAGGCAACAAGAGGCCCGGAGCGTTTGCCATGTACCTGGAGCCCTGGCA 1424 Query 363870 TGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGC 363929 ||| | ||||| || || ||||| ||| ||||| ||||| ||||| | | || Sbjct 1425 CTTCGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACCGGAAAGGAGGAGCAGAGGGC 1484 Query 363930 ACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG-GCAG 363988 | || || ||||| || | ||| | | |||| || |||||| | |||||| ||| Sbjct 1485 CAGAGACCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGCAA 1544 Query 363989 GTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTG 364048 ||| | ||||| || | || || |||| || || || || ||| ||||| | Sbjct 1545 CCAAG-ACTGGTCTCTGATGTGTCCGAACGAGTGCCCCGGGCTGGACGAGTGCTGGGGGG 1603 Query 364049 ACGACTATGTTGCTCTATACGAAAAGTATGA-----ATCGGAGGGAAAGGCTCGTAAGAC 364103 | || | | || ||| | |||||| | |||||| | || ||| | Sbjct 1604 AGGAGTTCGAGAAGCTGTACACCACGTATGAGAAGGAGGGGAGGGTCAAGCGCGT-GGTG 1662 Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163 || || ||| || | ||| ||||| || || || |||| || || || || || Sbjct 1663 AA----GGCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACGGAAACCGGTACGCC 1718 Query 364164 CTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 || ||| |||||||||| | |||||| | ||| |||||||||| | || || || | Sbjct 1719 GTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCA- 1777 Query 364224 TCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCG 364282 ||| || |||||||| || || || || |||| |||||| ||| ||| || | Sbjct 1778 TCAAAAGCAGCAACCTCTGCACAGAAATAGTTGAGTACACCAGCGACGATGAGGTAGCGG 1837 Query 364283 TATGTAACCTTGCGTCGATCGCGCT 364307 | ||||| || || || |||||||| Sbjct 1838 TGTGTAATCTGGCCTCCATCGCGCT 1862 Score = 91.5 bits (100), Expect = 4e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||||||||| || || || |||||||| || |||||||||| | ||||| | Sbjct 2308 GCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCC 2367 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || ||||| | || | ||| |||| || || ||||| |||| | |||| ||| Sbjct 2368 TACACCAGCAACATCTACACCCGCAGGGTGCTCTCGGGAGAGTTTCAGATAGTGAATCCT 2427 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 |||| |||| || || | || | || |||||| | || ||||||||| | | Sbjct 2428 CACCTGCTCAAAGACCTGACGGAGAGGGGACTGTGGAGCGAGGAGATGAAGAACCAGCTG 2487 Query 364930 ATCGC 364934 ||||| Sbjct 2488 ATCGC 2492 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010 |||||||| ||| |||| || |||||||||| | || |||||||| |||||||| Sbjct 3082 CAGAACATCGAAGGGATTCCTGACGATCTGAAGCAGCTGTATAAAACCGTGTGGGAAATC 3141 Query 365011 TCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAG 365070 ||| | || | | | ||||| ||||| ||||| || || ||| ||||||||| Sbjct 3142 TCCCAGAAGACCATACTCAAGATGGCCGCCGACCGCGGCGCCTTCATCGACCAGAGCCAG 3201 Query 365071 TCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTAC 365130 || | ||| | ||| | |||| | || || ||| || || |||||| |||||| Sbjct 3202 TCTCTGAACATCCACATCGCCGAGCCCAACTACGGCAAACTGACCAGCATGCACTTCTAC 3261 Query 365131 GGGTGGAAA 365139 || |||||| Sbjct 3262 GGCTGGAAA 3270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302768926979384