Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq15996 251 7e-62 seq25531 113 4e-20 seq471 109 5e-19 >seq15996 Length=6831 Score = 251 bits (278), Expect = 7e-62 Identities = 971/1509 (64%), Gaps = 40/1509 (3%) Strand=Plus/Minus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 |||| || | ||||||||| || | | ||| | || || | ||| ||| ||| Sbjct 2425 GATTCACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGG 2366 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 ||| | |||||||| ||||||||||| || ||||| | || |||||||| |||| Sbjct 2365 CTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCA 2306 Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 || | || | || ||||||||| ||| | ||||| || | ||| ||| Sbjct 2305 GCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTCCAGTCCA 2246 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 || || ||| || ||||||||||||||||| | ||||||| |||| | || Sbjct 2245 GCAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGAG 2186 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAG 145353 ||||| | | ||| ||| || | | || |||||||| ||||||||||| Sbjct 2185 AGCCTTCGTACGTCTCGTAGGGGCCG--AGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAG 2128 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTC 145413 ||| || | || || ||||| ||||| |||| |||||| || || ||| || Sbjct 2127 GGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTC 2068 Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 | |||| ||||| || | || || || || | ||||| | || | ||||| || Sbjct 2067 GAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATTCCGATCGG 2008 Query 145474 CCGATGTTTCATGTTGCTCATCCTCGCCG-----ACTCGATAGGATATCGATTACGGTCG 145528 || || | ||||| | || ||| ||| | ||| | | |||| ||| Sbjct 2007 CCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTT-GATT----TCG 1953 Query 145529 ATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCA 145588 ||||| || ||||||||| || | || || || | | | |||| ||||||| Sbjct 1952 ATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACAAACGCTAGTTTTTTAAAGTCA 1893 Query 145589 AACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACT 145648 || || | ||| | || | | |||| ||||| || |||| |||||| || Sbjct 1892 AA---AGTCCGCTCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACC 1836 Query 145649 GCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATG 145708 || ||| ||| || | |||| | || || || | ||| | ||||| | ||||||| Sbjct 1835 GCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATG 1776 Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768 || |||||||| ||||| || || ||||||||||| ||||| ||||| ||||||||||| Sbjct 1775 GTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGC 1716 Query 145769 CCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGC---GCACGCACC 145825 || || ||| ||| | || |||||| |||| | ||||| || |||| Sbjct 1715 GTACCGGTTTCCGTCTGGGACT---CGATAATGGCGTGCCACACCTGCTGAGCCTTCACC 1659 Query 145826 TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCG 145885 ||| | | ||||| | || || | |||| |||| ||| ||| | || Sbjct 1658 ACGCGCTTGACCCTCCCCTCCTTCTCATACGTGGTGTACAGCTTCTCGAACTCCTCCCCC 1599 Query 145886 TAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCG 145945 |||| ||| ||| ||||| |||| ||| ||||||||||| ||||| | |||| Sbjct 1598 CAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTC 1539 Query 145946 TTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTT 146003 | || | || ||| |||| || || | ||||| ||||| | | ||| | || || Sbjct 1538 TCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCTCTGGCCCTC 1479 Query 146004 TGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCC 146063 ||| ||||| || |||| ||||| | || | | | | ||| ||||| Sbjct 1478 TGC--TCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCC 1421 Query 146064 ACGGTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCACGTGAC 146120 | || || | || | ||| | ||||| || | ||||| |||||||| |||| || Sbjct 1420 AGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAAC 1361 Query 146121 GTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAG 146180 | || ||||||| |||| | || |||||| ||| ||| ||| |||||| || Sbjct 1360 GCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGC 1301 Query 146181 AGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGT 146240 | || | | || || || | ||| || |||||||| || ||| | Sbjct 1300 CGGCGATGTAGCTCCCCGTCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGGCCG 1241 Query 146241 ACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--CT 146298 ||||||| || ||| || | ||||| ||||| ||||| || ||||| ||| || Sbjct 1240 ACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCT 1181 Query 146299 TCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAA 146358 || ||| ||||||| ||||| | ||| ||| | | | || ||||| ||| | Sbjct 1180 TC--ATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAG 1123 Query 146359 CGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGT 146417 ||| ||| ||||| || || || || || | || || ||||| || || || Sbjct 1122 CGTGGGGGAGGCGTGGGTGAACCACTTCTCCG-ACAGCAGGTTGTACGTCTCAATGGCTG 1064 Query 146418 CTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCT 146477 | ||||| || || || | || || | |||||||||||| || || |||| Sbjct 1063 CGCTGATGTCCGTTTTGTGGATCCCGACAGATACTCTCATGAGCATGTGCTGCGGACGCT 1004 Query 146478 CCGCCACTTGATTGTCAATCTTTAACAAATAG--CCGTTCTCCAGGGTTTTGTATCCGAA 146535 ||||||||| || ||||| |||| ||| ||| |||||| || ||| | ||||| Sbjct 1003 CCGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCG--CTCCAGCGTCTTGAAGCCGAA 946 Query 146536 AAATTTGTA 146544 || ||||| Sbjct 945 GAAGTTGTA 937 >seq25531 Length=26544 Score = 113 bits (124), Expect = 4e-20 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||| ||||| | ||||| |||||| |||||||||| |||||||| ||||| | Sbjct 22109 TGTACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 22168 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 | || ||||||||||| |||||||||||||||||||| || Sbjct 22169 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGG 22208 >seq471 Length=23154 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | || | ||| |||||||| || |||||||| ||| | ||||| | Sbjct 16856 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCG 16797 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||| ||||| ||| |||| | | |||||||||||| |||||||| || || Sbjct 16796 TCTTCCAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTA 16737 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || |||| | ||| | || ||| ||| ||| | || | ||| | | Sbjct 16736 TCCTGGATCTTAGCTTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 16677 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || |||||||| || || || || || |||||||| Sbjct 16676 GTCTTACCGGTGAGGGTCTTCACAAAGATCTGCAT 16642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471806223598080