Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 251 7e-62
seq25531 113 4e-20
seq471 109 5e-19
>seq15996
Length=6831
Score = 251 bits (278), Expect = 7e-62
Identities = 971/1509 (64%), Gaps = 40/1509 (3%)
Strand=Plus/Minus
Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115
|||| || | ||||||||| || | | ||| | || || | ||| ||| |||
Sbjct 2425 GATTCACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGG 2366
Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175
||| | |||||||| ||||||||||| || ||||| | || |||||||| ||||
Sbjct 2365 CTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCA 2306
Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235
|| | || | || ||||||||| ||| | ||||| || | ||| |||
Sbjct 2305 GCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTCCAGTCCA 2246
Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295
|| || ||| || ||||||||||||||||| | ||||||| |||| | ||
Sbjct 2245 GCAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGAG 2186
Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAG 145353
||||| | | ||| ||| || | | || |||||||| |||||||||||
Sbjct 2185 AGCCTTCGTACGTCTCGTAGGGGCCG--AGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAG 2128
Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTC 145413
||| || | || || ||||| ||||| |||| |||||| || || ||| ||
Sbjct 2127 GGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTC 2068
Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473
| |||| ||||| || | || || || || | ||||| | || | ||||| ||
Sbjct 2067 GAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATTCCGATCGG 2008
Query 145474 CCGATGTTTCATGTTGCTCATCCTCGCCG-----ACTCGATAGGATATCGATTACGGTCG 145528
|| || | ||||| | || ||| ||| | ||| | | |||| |||
Sbjct 2007 CCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTT-GATT----TCG 1953
Query 145529 ATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCA 145588
||||| || ||||||||| || | || || || | | | |||| |||||||
Sbjct 1952 ATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACAAACGCTAGTTTTTTAAAGTCA 1893
Query 145589 AACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACT 145648
|| || | ||| | || | | |||| ||||| || |||| |||||| ||
Sbjct 1892 AA---AGTCCGCTCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACC 1836
Query 145649 GCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATG 145708
|| ||| ||| || | |||| | || || || | ||| | ||||| | |||||||
Sbjct 1835 GCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATG 1776
Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768
|| |||||||| ||||| || || ||||||||||| ||||| ||||| |||||||||||
Sbjct 1775 GTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGC 1716
Query 145769 CCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGC---GCACGCACC 145825
|| || ||| ||| | || |||||| |||| | ||||| || ||||
Sbjct 1715 GTACCGGTTTCCGTCTGGGACT---CGATAATGGCGTGCCACACCTGCTGAGCCTTCACC 1659
Query 145826 TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCG 145885
||| | | ||||| | || || | |||| |||| ||| ||| | ||
Sbjct 1658 ACGCGCTTGACCCTCCCCTCCTTCTCATACGTGGTGTACAGCTTCTCGAACTCCTCCCCC 1599
Query 145886 TAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCG 145945
|||| ||| ||| ||||| |||| ||| ||||||||||| ||||| | ||||
Sbjct 1598 CAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTC 1539
Query 145946 TTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTT 146003
| || | || ||| |||| || || | ||||| ||||| | | ||| | || ||
Sbjct 1538 TCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCTCTGGCCCTC 1479
Query 146004 TGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCC 146063
||| ||||| || |||| ||||| | || | | | | ||| |||||
Sbjct 1478 TGC--TCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCC 1421
Query 146064 ACGGTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCACGTGAC 146120
| || || | || | ||| | ||||| || | ||||| |||||||| |||| ||
Sbjct 1420 AGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAAC 1361
Query 146121 GTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAG 146180
| || ||||||| |||| | || |||||| ||| ||| ||| |||||| ||
Sbjct 1360 GCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGC 1301
Query 146181 AGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGT 146240
| || | | || || || | ||| || |||||||| || ||| |
Sbjct 1300 CGGCGATGTAGCTCCCCGTCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGGCCG 1241
Query 146241 ACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--CT 146298
||||||| || ||| || | ||||| ||||| ||||| || ||||| ||| ||
Sbjct 1240 ACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCT 1181
Query 146299 TCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAA 146358
|| ||| ||||||| ||||| | ||| ||| | | | || ||||| ||| |
Sbjct 1180 TC--ATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAG 1123
Query 146359 CGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGT 146417
||| ||| ||||| || || || || || | || || ||||| || || ||
Sbjct 1122 CGTGGGGGAGGCGTGGGTGAACCACTTCTCCG-ACAGCAGGTTGTACGTCTCAATGGCTG 1064
Query 146418 CTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCT 146477
| ||||| || || || | || || | |||||||||||| || || ||||
Sbjct 1063 CGCTGATGTCCGTTTTGTGGATCCCGACAGATACTCTCATGAGCATGTGCTGCGGACGCT 1004
Query 146478 CCGCCACTTGATTGTCAATCTTTAACAAATAG--CCGTTCTCCAGGGTTTTGTATCCGAA 146535
||||||||| || ||||| |||| ||| ||| |||||| || ||| | |||||
Sbjct 1003 CCGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCG--CTCCAGCGTCTTGAAGCCGAA 946
Query 146536 AAATTTGTA 146544
|| |||||
Sbjct 945 GAAGTTGTA 937
>seq25531
Length=26544
Score = 113 bits (124), Expect = 4e-20
Identities = 85/100 (85%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727
|||| | ||| ||||| | ||||| |||||| |||||||||| |||||||| ||||| |
Sbjct 22109 TGTACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 22168
Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767
| || ||||||||||| |||||||||||||||||||| ||
Sbjct 22169 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGG 22208
>seq471
Length=23154
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079
|| ||||| | || | ||| |||||||| || |||||||| ||| | ||||| |
Sbjct 16856 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCG 16797
Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139
|| || ||||| ||||| ||| |||| | | |||||||||||| |||||||| || ||
Sbjct 16796 TCTTCCAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTA 16737
Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199
|| ||| || |||| | ||| | || ||| ||| ||| | || | ||| | |
Sbjct 16736 TCCTGGATCTTAGCTTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 16677
Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| |||||||| || || || || || ||||||||
Sbjct 16676 GTCTTACCGGTGAGGGTCTTCACAAAGATCTGCAT 16642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471806223598080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |