Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1539 127 1e-24
seq3456 122 6e-23
>seq1539
Length=10098
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||||||||| || ||||| || ||||||||
Sbjct 2873 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAGGTAGGGACAGTGGGAATCTCGT 2932
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 2933 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2967
Score = 95.1 bits (104), Expect = 8e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 5366 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGT 5425
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 5426 GCCGGTATTTAGCCTTA 5442
>seq3456
Length=53900
Score = 122 bits (134), Expect = 6e-23
Identities = 130/172 (76%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378
||||||| || | ||| || || ||||| || |||||||| ||||||||| ||||||||
Sbjct 21917 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGTGCTCAGACCCAGTTTGATACCAAAAACG 21976
Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438
| || | |||||| |||||||| || | | |||| |||||||| | ||||| || |
Sbjct 21977 ACCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGACATGCTTGATGGGT 22036
Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490
| || | || ||||||||||||| || || || ||||| || || || ||
Sbjct 22037 TCATCAGAAAATTTGTGCTGTGTCCCGAGTGTGACAACCCTGAAACTGATCT 22088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334804275098972
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |