Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 473 2e-128
>seq15996
Length=6831
Score = 473 bits (524), Expect = 2e-128
Identities = 1272/1940 (66%), Gaps = 15/1940 (1%)
Strand=Plus/Minus
Query 62129 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62188
||||| ||||| || |||| | | ||||| || | || | || || || |||||
Sbjct 2480 TTCTTCATCTCCTCGCTCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTC 2421
Query 62189 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62248
|||| ||||| ||||| || | || || || ||||| || || ||||| || | |||
Sbjct 2420 ACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 2361
Query 62249 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62308
| ||||| || || |||| || || || || || || || ||||| || |||| ||
Sbjct 2360 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 2301
Query 62309 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 62368
| || || || | |||| | ||| || || || || | | ||| | | ||
Sbjct 2300 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTCCAGTCCAGCAGG 2241
Query 62369 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 62426
|| | || | | | || || || || || ||| | || |
Sbjct 2240 TCGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGAGAGC 2183
Query 62427 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 62486
|| | || || ||||| || || || | || || || || |||||||| | ||
Sbjct 2182 CTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 2123
Query 62487 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATG 62546
|||| || ||||| || ||||| | | || || || || || |||| || || |
Sbjct 2122 CGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTCGAACG 2063
Query 62547 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62606
| || | ||| || || |||||||| || || || || || || ||||| || || |
Sbjct 2062 GGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATTCCGATCGGCCTGT 2003
Query 62607 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62666
| | ||| || || | || ||||| || | || || || || || || ||||| || |
Sbjct 2002 GGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTGATTTCGATAATCTTGT 1943
Query 62667 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---CGCC 62723
| | ||| |||| || |||||| |||| | ||||| ||| ||||| |||
Sbjct 1942 TCAAGTTTTTGACGATGACTTTGGTCACAAACGCTAGTTTTTTAAAGTCAAAAGTCCGCT 1883
Query 62724 CATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 62783
|| | || ||||||| | || | || ||||||||||| || ||||||||||
Sbjct 1882 CAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGT 1823
Query 62784 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 62843
| | || | | ||| || ||||| || || || | |||||||| || | ||| |
Sbjct 1822 CGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCT 1763
Query 62844 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 62903
| || || ||||| |||| || || || || || || ||| | || ||||| |||||
Sbjct 1762 GCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCG 1703
Query 62904 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCT 62963
|||| || || ||||| || | ||| || ||||||| | | ||| |||
Sbjct 1702 TCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTGACCCTCC 1643
Query 62964 TTTCTCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAG 63021
|| | || || | ||||| | || |||||||| || ||||| | ||||||
Sbjct 1642 CCTCCTTCTCATACGTGGTGTACAGCTTC--TCGAACTCCTCCCCCCAGCACTCGTCCAG 1585
Query 63022 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 63081
|| || || || | ||||||||||| ||||| ||| || || ||||| |||||
Sbjct 1584 CCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCAT 1525
Query 63082 AAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC 63140
|| || || || ||||| | || || ||| || ||||||| || || ||||| ||||
Sbjct 1524 GAACAGGTCGGGGATCCACATGGCGTAGAAA-AGGTCTCTGGCCCTCTGCTCCTCCTTTC 1466
Query 63141 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63200
| || ||||| || || || ||||| | | | || | ||||| || |||| ||| |
Sbjct 1465 CGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACA 1406
Query 63201 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63260
|||| | |||| |||| ||||| |||||||| || | ||| | || ||||| || |
Sbjct 1405 TGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGT 1346
Query 63261 AAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTC 63320
| ||||||| ||| || | | || ||||| | || ||||| || | ||| ||||| |
Sbjct 1345 AGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCC 1286
Query 63321 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63380
| | | || || || | | | || |||||||| ||| || ||||| | |
Sbjct 1285 CCGTCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGG 1226
Query 63381 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 63440
| || | || | ||| || || ||||| || || || || ||| ||||| || || |
Sbjct 1225 CACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGA 1166
Query 63441 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAG 63500
| ||||| |||| || | | | |||||||| || || | || || || ||||| |
Sbjct 1165 AGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGG 1106
Query 63501 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63560
| ||||| || || || || || |||||||||||||| |||| | || ||| || |
Sbjct 1105 TGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGCTGCGCTGATGTCCGTTTTGT 1046
Query 63561 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63620
| || || || | || | ||| | ||||||||| || | || | | ||| ||| |
Sbjct 1045 GGATCCCGACAGATACTCTCATGAGCATGTGCTGCGGACGCTCCGCCACTTTGCCGTTGA 986
Query 63621 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63680
| ||||||| |||||| |||| || || || || || ||||||| || || || |
Sbjct 985 TCTTCAACAGGTAGGACCGCTCCAGCGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCGC 926
Query 63681 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAA 63740
| ||| | || || | |||||||| || || | | | ||| | || | ||
Sbjct 925 GGTCGAAGATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGCGT-C 867
Query 63741 TACTT-GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCC 63799
| ||| || || || ||| | || | ||| || |||| |||||| | | |||
Sbjct 866 TCCTTGGAGATCATGGGAGAGTGGCGTCTATTCAAGGGGTTGATGTAGTTGTACAGGTCC 807
Query 63800 TCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 63859
|||||||| ||||| || | || || || |||||||| || ||||| ||||| || |
Sbjct 806 TCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATCCGT 747
Query 63860 GCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCC 63919
|| || || ||||| || || || |||| || || ||||| || || || || |||
Sbjct 746 GCAGCGAGGATGGCGTAGTCGGGGTGTTTGGTTGTGAGGGTGGCGGCGATCTCTGCGGCC 687
Query 63920 AGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCT 63979
|| ||||| | || || ||||| || || | || | || ||||| |||||||| |
Sbjct 686 AGCGTGTCGAGCTCCACGGTTGTGACGCCGCTGTACAAACCCTGGATCACCTTCATCGTA 627
Query 63980 ATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGAT 64039
|| | | ||||| | | |||| ||| | || || || | || || |||||
Sbjct 626 ATCTGGGTCGGATCCACAAAGTCAGGGTTCAGCCCGTAGCACAGCTTCTGGATGCGAGAC 567
Query 64040 GTGATTTTATCAAACATGAC 64059
||||||||||| ||||||||
Sbjct 566 GTGATTTTATCGAACATGAC 547
Score = 96.9 bits (106), Expect = 4e-15
Identities = 124/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976
|||| ||||| || ||||| || || |||||| || | || || || || ||||| |
Sbjct 3268 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCGGCGATGTGGATGT 3209
Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036
||| ||| || || || ||||||||||| || | ||| || ||||| || | || ||||
Sbjct 3208 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCGGCGGCCATCTTGAGTATGGTCT 3149
Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087
| || | |||||||| | |||||||| | |||| | ||| || ||||
Sbjct 3148 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCGTCAGGAA 3098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633354690955200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |