Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq471 114 1e-20 seq15996 95.1 1e-14 >seq471 Length=23154 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| || || | |||||||| || |||| || || ||||| || Sbjct 16639 AAGATGCAGATCTTTGTGAAGACCCTCACCGGTAAGACCATCACCCTGGAGGTGGAGCCC 16698 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| ||| | || | ||||| || || || || |||||||| || || || || Sbjct 16699 AGCGACACCATCGAGAACGTCAAAGCTAAGATCCAGGATAAGGAGGGAATCCCCCCGGAC 16758 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || || |||||||||||| | || || |||||| ||||||| ||| Sbjct 16759 CAGCAGAGGCTGATCTTCGCCGGCAAACAGCTGGAAGACGGCCGCACTCTCTCCGACTAC 16818 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || |||||| Sbjct 16819 AACATCCAGAAGGAGTCCACC 16839 >seq15996 Length=6831 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 129737 TGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGAT 129796 ||||||| || ||||| | ||| | || || |||| |||||||||| || || || | Sbjct 1816 TGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGT 1757 Query 129797 TACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 | || ||| ||||||| || |||||||||| |||||||||||| || ||||| Sbjct 1756 TGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTC 1705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419548898389780