Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 127 4e-24
seq18152 89.7 1e-12
seq144 89.7 1e-12
seq3035 86.0 1e-11
>seq15996
Length=6831
Score = 127 bits (140), Expect = 4e-24
Identities = 225/326 (69%), Gaps = 4/326 (1%)
Strand=Plus/Minus
Query 293919 GGTGTACTCGACAATCTCAGCACAGAGGTTACTGCCCTTGATGGTGCCCGCATTAGACTG 293978
||||||||| || || || | |||||||| |||| |||||||||||| ||| |||
Sbjct 1818 GGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTG 1759
Query 293979 CATGTTCTTGGCATTGACACTGTCTTTGTTGAGGACATATGGCATACCCGTTTCAATCTG 294038
|| |||| ||| |||||||| || | || ||| |||| ||||| ||||
Sbjct 1758 GTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTG 1699
Query 294039 AGTGGTGACCATGGTGTTCCAGACATCGCGAGCCTTCACCACGCGCTTTGCCTTCCCCTC 294098
| || |||| || ||| || | ||||||||||||||||||| || |||||||
Sbjct 1698 GGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTGACCCTCCCCTC 1639
Query 294099 AGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAGACAGGCCAGG 294158
||||||| ||||||| |||| ||| | |||| || | || ||| || ||
Sbjct 1638 CTTCTCATACGTGGTGTACAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGGG 1579
Query 294159 GCACTCGTGAGGGTCAAGTAGAGACCA--CTGGGCATCAGTCTCCACGCGCTTCATGAAT 294216
|||||||| || | |||||||| || || | ||||||| | |||||||||
Sbjct 1578 GCACTCGTTCGGACACATCAGAGACCAGTCTTGG--TTGCTCTCCACTCTCTTCATGAAC 1521
Query 294217 AGATCATTGACCCACATTGCGTAAAA 294242
|| || || |||||| ||||| ||
Sbjct 1520 AGGTCGGGGATCCACATGGCGTAGAA 1495
>seq18152
Length=29925
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 22942 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 23001
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 23002 CCCACGTTGGGC 23013
>seq144
Length=87880
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 34771 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 34712
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 34711 CCCACGTTGGGC 34700
>seq3035
Length=2195
Score = 86.0 bits (94), Expect = 1e-11
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
||||||||||||||||||| |||||| ||||||||||||||| ||| | |||||||||
Sbjct 2193 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 2134
Query 142112 CCCCGCCAGAGA 142123
|||| ||||||
Sbjct 2133 TCCCGGCAGAGA 2122
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027375721405092
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |