Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq15996 127 4e-24 seq18152 89.7 1e-12 seq144 89.7 1e-12 seq3035 86.0 1e-11 >seq15996 Length=6831 Score = 127 bits (140), Expect = 4e-24 Identities = 225/326 (69%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 293919 GGTGTACTCGACAATCTCAGCACAGAGGTTACTGCCCTTGATGGTGCCCGCATTAGACTG 293978 ||||||||| || || || | |||||||| |||| |||||||||||| ||| ||| Sbjct 1818 GGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTG 1759 Query 293979 CATGTTCTTGGCATTGACACTGTCTTTGTTGAGGACATATGGCATACCCGTTTCAATCTG 294038 || |||| ||| |||||||| || | || ||| |||| ||||| |||| Sbjct 1758 GTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTG 1699 Query 294039 AGTGGTGACCATGGTGTTCCAGACATCGCGAGCCTTCACCACGCGCTTTGCCTTCCCCTC 294098 | || |||| || ||| || | ||||||||||||||||||| || ||||||| Sbjct 1698 GGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTGACCCTCCCCTC 1639 Query 294099 AGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAGACAGGCCAGG 294158 ||||||| ||||||| |||| ||| | |||| || | || ||| || || Sbjct 1638 CTTCTCATACGTGGTGTACAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGGG 1579 Query 294159 GCACTCGTGAGGGTCAAGTAGAGACCA--CTGGGCATCAGTCTCCACGCGCTTCATGAAT 294216 |||||||| || | |||||||| || || | ||||||| | ||||||||| Sbjct 1578 GCACTCGTTCGGACACATCAGAGACCAGTCTTGG--TTGCTCTCCACTCTCTTCATGAAC 1521 Query 294217 AGATCATTGACCCACATTGCGTAAAA 294242 || || || |||||| ||||| || Sbjct 1520 AGGTCGGGGATCCACATGGCGTAGAA 1495 >seq18152 Length=29925 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 22942 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 23001 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 23002 CCCACGTTGGGC 23013 >seq144 Length=87880 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 34771 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 34712 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 34711 CCCACGTTGGGC 34700 >seq3035 Length=2195 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 2193 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 2134 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 2133 TCCCGGCAGAGA 2122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027375721405092