Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq471 179 7e-40 seq21676 93.3 8e-14 seq15996 89.7 9e-13 >seq471 Length=23154 Score = 179 bits (198), Expect = 7e-40 Identities = 183/236 (78%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| |||||||| | ||||| | |||| ||| || |||||||| || |||||||| | Sbjct 16876 TTTAGTTTCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGT 16817 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | |||||||| || | || ||||| | ||| || |||||||| || || || || |||| Sbjct 16816 AGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGT 16757 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || || || || ||||| || || ||||| || |||||| |||||||||||| |||| Sbjct 16756 CCGGGGGGATTCCCTCCTTATCCTGGATCTTAGCTTTGACGTTCTCGATGGTGTC-GCTG 16698 Query 68407 AT-TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||| ||||||||| || || ||||||||||| || || |||||||| Sbjct 16697 GGCTCCACCTCCAGGGTGATGGTCTTACCGGTGAGGGTCTTCACAAAGATCTGCAT 16642 >seq21676 Length=13877 Score = 93.3 bits (102), Expect = 8e-14 Identities = 94/121 (78%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || |||||||| || | ||||| || | |||||| || || || || || || || || Sbjct 2 TAGTCGGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGA 61 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || ||||||||||||||||| || ||||| ||||| ||| ||| |||||||| ||| Sbjct 62 TCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC-GCT 120 Query 68406 G 68406 | Sbjct 121 G 121 >seq15996 Length=6831 Score = 89.7 bits (98), Expect = 9e-13 Identities = 339/524 (65%), Gaps = 15/524 (3%) Strand=Plus/Minus Query 31725 GTGTATTCGACAATCTCGGCACAAAGATTGCTGCCCGTGATGGTGCCGGCATTGGACTGC 31784 ||||| || || || || | || || ||||||| |||||||||| ||| ||| Sbjct 1817 GTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGG 1758 Query 31785 ATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTG 31843 || ||||| ||| || || ||| |||| |||| ||| ||| | || || || |||| Sbjct 1757 TTGCTCTTCCTGTTGCAGGC-GTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTG 1699 Query 31844 CGTGATGATCATCGCATTCCAGACATCGCGCGCTTTGACGACTTTCTTCGCACGCCCCTC 31903 | ||| || || | ||| || | | || || || || ||| | | |||||| Sbjct 1698 GGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTGACCCTCCCCTC 1639 Query 31904 GGACTCGTAGCGAAGA-TACAGGTCCTCGTACTCCTTGCCAAAGGCATCGGTTAGACCGG 31962 ||| || || | ||||| | |||| |||||| || || ||| || |||| Sbjct 1638 CTTCTCATA-CGTGGTGTACAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGG 1580 Query 31963 GACACTCCTTGGGGTCGAAGAGCGACCATGCGACATCGGCCTCTACTCGCTTCATGAACA 32022 | ||||| || || | || ||||| | | | ||| |||| ||||||||||| Sbjct 1579 GGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACA 1520 Query 32023 GGTCGTTCAGCCACATCGCGTAAAACAGATTCCTGGCGCGTTGGGTCTCCTCACCCTGGT 32082 ||||| | |||||| ||||| || || | ||||| | || ||||| || || Sbjct 1519 GGTCGGGGATCCACATGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGT 1460 Query 32083 TACGTC-GGAGCAGCAGGAAGTCCATGATGTCGGGGTGGTGGGGCTCGAGGTACACGGCG 32141 | | || ||| ||||||||| | | |||| ||| |||||| ||||||| ||| Sbjct 1459 T-CTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCA 1401 Query 32142 AAAGATCC------CTTGCGGCGACCCCCCTGGTTTGCGTATGCAGATGTCGTGTCGTAC 32195 || | ||| |||| | || ||||||| |||| | || ||| ||| Sbjct 1400 AACGCTCCGGGCCTCTTGTTG---CCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAG 1344 Query 32196 ACCTTCAGCATGGGTACGATGCCATCAGACTCGCCATTGGTCCC 32239 || |||||||||| |||| || | || | ||| ||||| || Sbjct 1343 ACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCC 1300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921219051956640