Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq471 179 7e-40
seq21676 93.3 8e-14
seq15996 89.7 9e-13
>seq471
Length=23154
Score = 179 bits (198), Expect = 7e-40
Identities = 183/236 (78%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286
|||| |||||||| | ||||| | |||| ||| || |||||||| || |||||||| |
Sbjct 16876 TTTAGTTTCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGT 16817
Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346
| |||||||| || | || ||||| | ||| || |||||||| || || || || ||||
Sbjct 16816 AGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGT 16757
Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406
| || || || || ||||| || || ||||| || |||||| |||||||||||| ||||
Sbjct 16756 CCGGGGGGATTCCCTCCTTATCCTGGATCTTAGCTTTGACGTTCTCGATGGTGTC-GCTG 16698
Query 68407 AT-TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || |||| ||||||||| || || ||||||||||| || || ||||||||
Sbjct 16697 GGCTCCACCTCCAGGGTGATGGTCTTACCGGTGAGGGTCTTCACAAAGATCTGCAT 16642
>seq21676
Length=13877
Score = 93.3 bits (102), Expect = 8e-14
Identities = 94/121 (78%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
|| |||||||| || | ||||| || | |||||| || || || || || || || ||
Sbjct 2 TAGTCGGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGA 61
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || ||||||||||||||||| || ||||| ||||| ||| ||| |||||||| |||
Sbjct 62 TCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC-GCT 120
Query 68406 G 68406
|
Sbjct 121 G 121
>seq15996
Length=6831
Score = 89.7 bits (98), Expect = 9e-13
Identities = 339/524 (65%), Gaps = 15/524 (3%)
Strand=Plus/Minus
Query 31725 GTGTATTCGACAATCTCGGCACAAAGATTGCTGCCCGTGATGGTGCCGGCATTGGACTGC 31784
||||| || || || || | || || ||||||| |||||||||| ||| |||
Sbjct 1817 GTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGG 1758
Query 31785 ATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTG 31843
|| ||||| ||| || || ||| |||| |||| ||| ||| | || || || ||||
Sbjct 1757 TTGCTCTTCCTGTTGCAGGC-GTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTG 1699
Query 31844 CGTGATGATCATCGCATTCCAGACATCGCGCGCTTTGACGACTTTCTTCGCACGCCCCTC 31903
| ||| || || | ||| || | | || || || || ||| | | ||||||
Sbjct 1698 GGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGCTTGACCCTCCCCTC 1639
Query 31904 GGACTCGTAGCGAAGA-TACAGGTCCTCGTACTCCTTGCCAAAGGCATCGGTTAGACCGG 31962
||| || || | ||||| | |||| |||||| || || ||| || ||||
Sbjct 1638 CTTCTCATA-CGTGGTGTACAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGG 1580
Query 31963 GACACTCCTTGGGGTCGAAGAGCGACCATGCGACATCGGCCTCTACTCGCTTCATGAACA 32022
| ||||| || || | || ||||| | | | ||| |||| |||||||||||
Sbjct 1579 GGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACA 1520
Query 32023 GGTCGTTCAGCCACATCGCGTAAAACAGATTCCTGGCGCGTTGGGTCTCCTCACCCTGGT 32082
||||| | |||||| ||||| || || | ||||| | || ||||| || ||
Sbjct 1519 GGTCGGGGATCCACATGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGT 1460
Query 32083 TACGTC-GGAGCAGCAGGAAGTCCATGATGTCGGGGTGGTGGGGCTCGAGGTACACGGCG 32141
| | || ||| ||||||||| | | |||| ||| |||||| ||||||| |||
Sbjct 1459 T-CTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCA 1401
Query 32142 AAAGATCC------CTTGCGGCGACCCCCCTGGTTTGCGTATGCAGATGTCGTGTCGTAC 32195
|| | ||| |||| | || ||||||| |||| | || ||| |||
Sbjct 1400 AACGCTCCGGGCCTCTTGTTG---CCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAG 1344
Query 32196 ACCTTCAGCATGGGTACGATGCCATCAGACTCGCCATTGGTCCC 32239
|| |||||||||| |||| || | || | ||| ||||| ||
Sbjct 1343 ACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCC 1300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921219051956640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |