Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq15996 587 1e-162 seq25531 118 2e-21 >seq15996 Length=6831 Score = 587 bits (650), Expect = 1e-162 Identities = 1011/1456 (69%), Gaps = 43/1456 (3%) Strand=Plus/Minus Query 243992 CCTTCGATGTT---CTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCG 244048 ||||||||| | ||| || || || ||||| |||| |||||| | ||| | ||| Sbjct 2525 CCTTCGATGATTACCTGAACGGACCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCG 2466 Query 244049 TTCCACAGGCCCAAGCGCTCC---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAAC 244105 ||||||| ||| | |||| || | | || |||||| ||||| | ||||||| Sbjct 2465 CTCCACAGTCCC---CTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTCACTATCTGAAAC 2409 Query 244106 TCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTG 244165 |||||||| ||||| | ||| ||||| ||||||| || | |||||| ||| || Sbjct 2408 TCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTG 2349 Query 244166 TTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTC 244225 |||||||| ||||| || ||| || || ||||| || | || |||||| ||||||||| Sbjct 2348 TTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTC 2289 Query 244226 ACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAG-GTC 244284 ||||||||| | ||| | || | ||||||||| || | | | | | ||| Sbjct 2288 ACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTCCAGTCCAGCAGGTCGGTGGGCGTC 2229 Query 244285 CTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTC 244344 || | ||||||||| |||| || | ||||||||||| || ||| || Sbjct 2228 TTCTC----------CCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGAGAGCCTTC 2179 Query 244345 GTAGGTCGGGTAGGGACCGTCGCGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGT 244403 ||| ||| |||||| ||| || | | |||||||| |||||| | || |||||||||| Sbjct 2178 GTACGTCTCGTAGGGGCCGA-GCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGT 2120 Query 244404 AGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGGG 244462 ||||||||||||| ||||| |||||| | || | |||| | || ||| ||| Sbjct 2119 AGTAGATGGTCTCAAAGATTTGAATGTTCA-GCAGCTGAGCCTCGGGGCTTTCGAACGGG 2061 Query 244463 ATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGT 244522 || ||| | |||||| |||| |||| |||||||||||||| ||||| || ||||| Sbjct 2060 TAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATTCCGATCGGCCTGTGG 2001 Query 244523 CGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTG 244582 ||||||||||| | ||||| ||||| ||||| ||||| ||||| | |||||| Sbjct 2000 CGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTGATTTCGATAATCTTGTTC 1941 Query 244583 AGGTTGCGGGTGATCA-TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGG 244641 | ||| | ||| | | || | || || || | |||||| | || | Sbjct 1940 AAGTTTTTGACGATGACTTTGGTC-ACAAACGCTAGTTTTTTAAAGTCAAAA--GTCCG- 1885 Query 244642 ATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGAC 244701 ||| | | || || || |||||| |||| | |||||| || || || Sbjct 1884 ---CTCAGGGGTG---------ACGTACATGTTGAGCGCGATGGAGGCCAGATTACACAC 1837 Query 244702 GGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGAT 244761 || ||||| || | ||||||||| || || || ||||||||||| |||| ||||| Sbjct 1836 CGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGAT 1777 Query 244762 GGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 ||||||||| | ||| || ||| ||| |||||||||||| ||||| |||||| | || Sbjct 1776 GGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGG 1717 Query 244822 CCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGT 244881 | ||||| || ||||| ||| | | || ||| | | | |||||| ||| Sbjct 1716 CGTACCGGTTTCCGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCAC 1657 Query 244882 CCTGCGAG-CCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCC 244940 | || | || | ||||| ||| || ||||||||| ||||||||| |||| Sbjct 1656 GC-GCTTGACCCTCCCCTCCTTCTCATACGTGGTGTACAGCTTCTCGAACTCCTCCCCCC 1598 Query 244941 AGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCT 245000 || |||||| || ||||||||| ||| ||||| ||| ||| || | | || Sbjct 1597 AGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCT 1538 Query 245001 TGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCT 245060 || |||| |||||| |||||||||||||| | ||| | ||| ||||| |||| ||||| Sbjct 1537 CCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCTCTGGCCCTCT 1478 Query 245061 GCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGG 245120 |||| ||| || ||||||||| ||||||||| |||||||| ||||||| |||||||| Sbjct 1477 GCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCCAGG 1418 Query 245121 GCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCT 245180 |||||| ||| | || | || ||||||| |||||||||||||||||| || | | Sbjct 1417 GCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAACGCG 1358 Query 245181 CGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCT 245240 | |||| ||| | ||| | || || | ||||| |||| |||||||||||| Sbjct 1357 CCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGG 1298 Query 245241 TGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCT 245300 ||||||| ||| | | || | ||||| | || ||| | ||| ||||| || Sbjct 1297 CGATGTAGCTCCCCGTCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGGCCGACT 1238 Query 245301 TGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCA 245360 ||||||||||||| || ||| | ||||| ||||| || |||||||| ||||| Sbjct 1237 TGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCTTCA 1178 Query 245361 TGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGG 245420 || |||||| |||||| ||||||||| ||| || | | | || |||||| || |||| Sbjct 1177 TGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTGG 1118 Query 245421 GGCTGGCGTGGGTAAA 245436 || ||||||||| || Sbjct 1117 GGGAGGCGTGGGTGAA 1102 >seq25531 Length=26544 Score = 118 bits (130), Expect = 2e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 |||||||||||| |||||||| | ||| ||| ||||| |||| ||||||||| || Sbjct 22613 CATGAAGAGGTCTGGGATCCACATGGCGAAGAACAGGTCTCTGGCCCTCTGCTCCTCTTT 22672 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 || ||||||||| ||| ||| | |||||||| || |||| ||||| ||||||| ||| Sbjct 22673 ACCTGTGTTCTTCTTCAACTCTAGGAAGTCAAACACATCGAAATGCCACGGCTCCAGGTA 22732 Query 245131 GACAGCGAGGGCGCCGGG 245148 ||||||| ||| ||||| Sbjct 22733 CACAGCGAAGGCCCCGGG 22750 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||||||||| ||||| | ||| ||||| ||||||| || ||||| ||| Sbjct 21103 ACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCAATG 21162 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || || || || |||||||| | || |||||| Sbjct 21163 GACTCATTGTTGCCCAGGATCTGGGCAGTTGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 21222 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| || ||||| Sbjct 21223 CTGTTCCTCACACCATGCCT 21242 Score = 105 bits (116), Expect = 1e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| |||||||| ||||| || || ||| | |||||||||||||| | ||| || Sbjct 22108 GTGTACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 22167 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTC 244833 ||| ||| ||||||||||||||||||||||||| | ||| |||||||| Sbjct 22168 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTACCGGTCTC 22220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943925909949120