Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 587 1e-162
seq25531 118 2e-21
>seq15996
Length=6831
Score = 587 bits (650), Expect = 1e-162
Identities = 1011/1456 (69%), Gaps = 43/1456 (3%)
Strand=Plus/Minus
Query 243992 CCTTCGATGTT---CTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCG 244048
||||||||| | ||| || || || ||||| |||| |||||| | ||| | |||
Sbjct 2525 CCTTCGATGATTACCTGAACGGACCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCG 2466
Query 244049 TTCCACAGGCCCAAGCGCTCC---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAAC 244105
||||||| ||| | |||| || | | || |||||| ||||| | |||||||
Sbjct 2465 CTCCACAGTCCC---CTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTCACTATCTGAAAC 2409
Query 244106 TCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTG 244165
|||||||| ||||| | ||| ||||| ||||||| || | |||||| ||| ||
Sbjct 2408 TCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTG 2349
Query 244166 TTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTC 244225
|||||||| ||||| || ||| || || ||||| || | || |||||| |||||||||
Sbjct 2348 TTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTC 2289
Query 244226 ACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAG-GTC 244284
||||||||| | ||| | || | ||||||||| || | | | | | |||
Sbjct 2288 ACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTCCAGTCCAGCAGGTCGGTGGGCGTC 2229
Query 244285 CTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTC 244344
|| | ||||||||| |||| || | ||||||||||| || ||| ||
Sbjct 2228 TTCTC----------CCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGAGAGCCTTC 2179
Query 244345 GTAGGTCGGGTAGGGACCGTCGCGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGT 244403
||| ||| |||||| ||| || | | |||||||| |||||| | || ||||||||||
Sbjct 2178 GTACGTCTCGTAGGGGCCGA-GCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGT 2120
Query 244404 AGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGGG 244462
||||||||||||| ||||| |||||| | || | |||| | || ||| |||
Sbjct 2119 AGTAGATGGTCTCAAAGATTTGAATGTTCA-GCAGCTGAGCCTCGGGGCTTTCGAACGGG 2061
Query 244463 ATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGT 244522
|| ||| | |||||| |||| |||| |||||||||||||| ||||| || |||||
Sbjct 2060 TAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATTCCGATCGGCCTGTGG 2001
Query 244523 CGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTG 244582
||||||||||| | ||||| ||||| ||||| ||||| ||||| | ||||||
Sbjct 2000 CGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTGATTTCGATAATCTTGTTC 1941
Query 244583 AGGTTGCGGGTGATCA-TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGG 244641
| ||| | ||| | | || | || || || | |||||| | || |
Sbjct 1940 AAGTTTTTGACGATGACTTTGGTC-ACAAACGCTAGTTTTTTAAAGTCAAAA--GTCCG- 1885
Query 244642 ATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGAC 244701
||| | | || || || |||||| |||| | |||||| || || ||
Sbjct 1884 ---CTCAGGGGTG---------ACGTACATGTTGAGCGCGATGGAGGCCAGATTACACAC 1837
Query 244702 GGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGAT 244761
|| ||||| || | ||||||||| || || || ||||||||||| |||| |||||
Sbjct 1836 CGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGAT 1777
Query 244762 GGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821
||||||||| | ||| || ||| ||| |||||||||||| ||||| |||||| | ||
Sbjct 1776 GGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGG 1717
Query 244822 CCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGT 244881
| ||||| || ||||| ||| | | || ||| | | | |||||| |||
Sbjct 1716 CGTACCGGTTTCCGTCTGGGACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCAC 1657
Query 244882 CCTGCGAG-CCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCC 244940
| || | || | ||||| ||| || ||||||||| ||||||||| ||||
Sbjct 1656 GC-GCTTGACCCTCCCCTCCTTCTCATACGTGGTGTACAGCTTCTCGAACTCCTCCCCCC 1598
Query 244941 AGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCT 245000
|| |||||| || ||||||||| ||| ||||| ||| ||| || | | ||
Sbjct 1597 AGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTCT 1538
Query 245001 TGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCT 245060
|| |||| |||||| |||||||||||||| | ||| | ||| ||||| |||| |||||
Sbjct 1537 CCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCTCTGGCCCTCT 1478
Query 245061 GCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGG 245120
|||| ||| || ||||||||| ||||||||| |||||||| ||||||| ||||||||
Sbjct 1477 GCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGTGCCAGG 1418
Query 245121 GCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCT 245180
|||||| ||| | || | || ||||||| |||||||||||||||||| || | |
Sbjct 1417 GCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGTAACGCG 1358
Query 245181 CGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCT 245240
| |||| ||| | ||| | || || | ||||| |||| ||||||||||||
Sbjct 1357 CCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGG 1298
Query 245241 TGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCT 245300
||||||| ||| | | || | ||||| | || ||| | ||| ||||| ||
Sbjct 1297 CGATGTAGCTCCCCGTCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGGCCGACT 1238
Query 245301 TGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCA 245360
||||||||||||| || ||| | ||||| ||||| || |||||||| |||||
Sbjct 1237 TGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCTTCA 1178
Query 245361 TGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGG 245420
|| |||||| |||||| ||||||||| ||| || | | | || |||||| || ||||
Sbjct 1177 TGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTGG 1118
Query 245421 GGCTGGCGTGGGTAAA 245436
|| ||||||||| ||
Sbjct 1117 GGGAGGCGTGGGTGAA 1102
>seq25531
Length=26544
Score = 118 bits (130), Expect = 2e-21
Identities = 109/138 (79%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070
|||||||||||| |||||||| | ||| ||| ||||| |||| ||||||||| ||
Sbjct 22613 CATGAAGAGGTCTGGGATCCACATGGCGAAGAACAGGTCTCTGGCCCTCTGCTCCTCTTT 22672
Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130
|| ||||||||| ||| ||| | |||||||| || |||| ||||| ||||||| |||
Sbjct 22673 ACCTGTGTTCTTCTTCAACTCTAGGAAGTCAAACACATCGAAATGCCACGGCTCCAGGTA 22732
Query 245131 GACAGCGAGGGCGCCGGG 245148
||||||| ||| |||||
Sbjct 22733 CACAGCGAAGGCCCCGGG 22750
Score = 113 bits (124), Expect = 9e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156
||||||||||||||||| ||||| | ||| ||||| ||||||| || ||||| |||
Sbjct 21103 ACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCAATG 21162
Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216
||| |||||||||| ||||| || || || || |||||||| | || ||||||
Sbjct 21163 GACTCATTGTTGCCCAGGATCTGGGCAGTTGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 21222
Query 244217 CTGTTCCTCACGCCGTGCCT 244236
||||||||||| || |||||
Sbjct 21223 CTGTTCCTCACACCATGCCT 21242
Score = 105 bits (116), Expect = 1e-17
Identities = 91/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780
||||||| |||||||| ||||| || || ||| | |||||||||||||| | ||| ||
Sbjct 22108 GTGTACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 22167
Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTC 244833
||| ||| ||||||||||||||||||||||||| | ||| ||||||||
Sbjct 22168 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTACCGGTCTC 22220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943925909949120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |