Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq15996 168 8e-37 seq25531 95.1 1e-14 >seq15996 Length=6831 Score = 168 bits (186), Expect = 8e-37 Identities = 842/1320 (64%), Gaps = 72/1320 (5%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | || | | |||| ||||| |||| ||| |||||||||||| Sbjct 2384 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 2325 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || |||||||| || |||| || |||||||| | | || | | || ||| Sbjct 2324 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 2265 Query 114062 TTGAGGGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAAC 114115 || ||||| | |||||| || | || || | |||||| |||| || || Sbjct 2264 TTCAGGGCCTTCCAGTCCAGCAGGTCGGTGGGCGTCTTCTCCC------ACATGTCGTAC 2211 Query 114116 TGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCC---CTCAACC 114172 |||||||| || | | | | || || || || | |||||||| ||||| |||| | Sbjct 2210 TGGAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCG 2151 Query 114173 TCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA 114232 |||| ||| |||||||||| ||||| |||| || || |||||||| || || Sbjct 2150 ---GCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATG 2094 Query 114233 TTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCG 114292 |||| || |||||| | || |||| | || | || || | || || Sbjct 2093 TTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCC 2034 Query 114293 AGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTC 114351 | ||| || || |||| || || || | || | | | || ||||| || || | || Sbjct 2033 AAACCCTGCACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCTC---CGCT-TC 1978 Query 114352 ---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 114408 ||| || || | || | ||||||| | | || | |||||| || || || || Sbjct 1977 AGGCACTGGGTAGTAGTTGATTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGT 1918 Query 114409 GATTTCATGAAGCT--TTTCGTAA--TCAAAACTGCGAGTCTCTTCATTGACATACTTAG 114464 | || | ||| ||| ||| |||||| | || ||| |||| ||| | Sbjct 1917 CA---CAA-ACGCTAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGGTGACGTACATGT 1865 Query 114465 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 114524 || ||||| || |||||||||||||| | |||||| | |||||||| | | Sbjct 1864 TGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTA 1805 Query 114525 TTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 114584 |||| || || | || || || |||||||||| |||| || || ||| ||| Sbjct 1804 TTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGT 1745 Query 114585 TACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAG 114644 | || || || ||||| |||||||| ||||| || || ||||| ||||||| || ||| | Sbjct 1744 TGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGG 1685 Query 114645 CCTTCCAGACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTT 114703 | | ||| || | | | | || ||| | ||| | | |||||||| ||| ||| | Sbjct 1684 CGTGCCACACCTGCTGAGCCT-TCACCACGCGCTTGACCCTCCCCTCCTTCTCATACGTG 1626 Query 114704 GTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG 114763 ||||| || || ||||| || ||| | ||| ||||| || || | || Sbjct 1625 GTGTACAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGA 1566 Query 114764 CAGAAGAGAGACCA---TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATC 114820 || | |||||||| ||| | |||| || | ||||||||| ||||| |||||| Sbjct 1565 CACATCAGAGACCAGTCTTGGTTGCTCTCC---ACTCTCTTCATGAACAGGTCGGGGATC 1509 Query 114821 CAGAGAGCTGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAA 114879 || | || |||| || || | | | ||| || | | || || || || Sbjct 1508 CACATGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTG-TTCTTCTTCAG 1450 Query 114880 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC---- 114935 ||||| ||||| | | || |||||| || |||||||||| || | | | Sbjct 1449 CTCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGG 1390 Query 114936 CCTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTG 114995 ||| | | || |||||| || || | ||| ||| || | || | ||||| | Sbjct 1389 CCTCTTGTTG-CCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGG 1331 Query 114996 GAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCT--CTGAC 115053 | | || || | || | ||| || || || | || || ||| | | | Sbjct 1330 GGACGAGCCCGTTGGAGTTGCCGTTGGTGCC-------GGCGATGTA---GCTCCCCGTC 1281 Query 115054 -ATC--ATGGATGTG-----CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC 115105 ||| ||| | || || || || ||||| ||| |||| ||||| | || ||| Sbjct 1280 GATCGGATGCAGCTGACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACAC 1221 Query 115106 TCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAG 115165 | | | || || |||| || || ||||| ||| |||| | |||| ||||||||| Sbjct 1220 TGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAG 1161 Query 115166 CTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 || |||| |||||||| || || ||||||||||| || || | |||||| ||||| Sbjct 1160 CTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC 1101 >seq25531 Length=26544 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| ||||||| | |||||||||| |||| ||| ||||| || || Sbjct 21136 TAGATGTTGCTGGTGTAGGGCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTTGAA 21195 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 |||||||||||||| |||| ||| || ||||| Sbjct 21196 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 21227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597092168196960