Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq730 91.5 2e-13 seq18807 87.8 2e-12 seq18806 87.8 2e-12 seq18046 87.8 2e-12 >seq730 Length=28029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| |||||||||| Sbjct 6151 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 6210 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 6211 CTATACTAACGAGGA 6225 >seq18807 Length=3261 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || || | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 177 TCTCCCCGTCAGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 236 Query 57066 ATACTACCGAGGATTG 57081 |||||| |||||| || Sbjct 237 ATACTAACGAGGACTG 252 >seq18806 Length=4747 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || || | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 1747 TCTCCCCGTCAGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 1688 Query 57066 ATACTACCGAGGATTG 57081 |||||| |||||| || Sbjct 1687 ATACTAACGAGGACTG 1672 >seq18046 Length=8152 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 4166 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4225 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 4226 ATACTAACGAGGA 4238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542975062918080