Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq15996 288 1e-72 seq25531 95.1 1e-14 >seq15996 Length=6831 Score = 288 bits (318), Expect = 1e-72 Identities = 1037/1602 (65%), Gaps = 39/1602 (2%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||| | |||||| || |||||| ||| ||||| | ||||| | |||| Sbjct 937 TACAACTTCTTCGGCTTCAAGACGCTGGAGCGGTCCTACCTGTTGAAGATCAACGGCAAA 996 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || | ||||| ||||| || |||| ||| | || | ||||||| ||| ||| Sbjct 997 GTGGCGGAGCGTCCGCAGCACATGCTCATGAGAGTATCTGTCGGGATCCACAAAACGGAC 1056 Query 93838 ATGC-CGAATGTTTTGCGGGCTTTCAGAGACATGCGG---GACAAGAGGTATACCATGGC 93893 || || | ||| | | | || || ||| | || ||| ||| ||| || Sbjct 1057 ATCAGCGCAGCCATTGAGA-CGTACA---ACCTGCTGTCGGAGAAGTGGTTCACCCACGC 1112 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | |||| || || ||||||||||| ||| ||||||| |||| || |||||| | Sbjct 1113 CTCCCCCACGCTCTTCAACGCGGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCT 1172 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 | | |||| |||| |||| || |||| ||||| || ||| | ||||| ||| Sbjct 1173 CGCCATGAAGGACGACAGCATCGAAGGCATTTACGACACGCTGAAGCAGTGTGCCCTCAT 1232 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || | || ||||||||||| | ||| | | | || | | ||| ||| Sbjct 1233 CTCCAAGTCGGCCGGGGGAATCGGCGTGGCGGTCAGCTGCATCCGATCGACGGGGAGCTA 1292 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 |||| ||| ||||| |||| ||||||||| |||||||| ||||| | |||| |||||| Sbjct 1293 CATCGCCGGCACCAACGGCAACTCCAACGGGCTCGTCCCCATGCTGAGAGTCTACAACAA 1352 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | ||||||| ||||| |||||||| || | |||| || | || || | || || Sbjct 1353 CACGGCGCGTTACGTCGACCAGGGAGGCAACAAGAGGCCCGGAGCGTTTGCCATGTACCT 1412 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||||||||| |||||| | ||| | || ||| |||||| ||| || || Sbjct 1413 GGAGCCCTGGCACTTCGACGTGTTTGACTTCCTGGAGCTGAAGAAGAACACCGGAAAGGA 1472 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 | |||||||||||||||| |||||||| | ||| | || ||||| || ||||| | Sbjct 1473 GGAGCAGAGGGCCAGAGACCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGAAGAG 1532 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || |||| ||| | |||| ||| | ||||| || || || ||||| ||| ||| Sbjct 1533 AGTGGAGAGCAACCAAGACTGGTCTCTGATGTGTCCGAACGAGTGCCCCGGGCTGGACGA 1592 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 || || | || || | |||| | || || | |||| | || || Sbjct 1593 GTGCTGGGGGGAGGAGTTCGAGAAGCTGTACACCACGTATGAGAAGGAGGGGAGGGTCAA 1652 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 | || || | ||| | || ||||| | || | || ||| ||| || || Sbjct 1653 GCGCGTGGTGAAGGCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACGGAAACCGG 1712 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 |||||| ||||| ||| ||| ||| | |||| ||| |||||||||| | || || Sbjct 1713 TACGCCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGG 1772 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG--GACGAG 94611 ||||| ||| || || ||||| || || || ||||| || | || || ||| Sbjct 1773 CACCATCAAAAGCAGCAACCTCTGCACAGAAATAGTTGAGTACAC--CAGCGACGATGAG 1830 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671 | || |||||||| |||| ||||||| | || || | || || | ||| || Sbjct 1831 GTAGCGGTGTGTAATCTGGCCTCCATC--GCGCTCAACAT--GTACGTCACCCCTGAGCG 1886 Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAG-GATGGTCTTGAA 94730 ||| | || | | | |||||| | ||| || ||| || Sbjct 1887 --GACTTTTGACTTTAAAAAACTAGCGTTTGTGACC-------AAAGTCATCGTCAAAAA 1937 Query 94731 CCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCT 94790 | |||||| | | ||||| | |||| |||||| || || || |||||||| || ||| Sbjct 1938 CTTGAACAAGATTATCGAAATCAACTACTACCCAGTGCCTGAAGCGGAGAAGTCCAACAA 1997 Query 94791 GAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCG 94850 | || |||| ||||| |||||||| |||||||| || ||||| | | | ||||| Sbjct 1998 GCGCCACAGGCCGATCGGAATCGGCGTGCAGGGTTTGGCAGACGCCTTCATCCTCATGCG 2057 Query 94851 TCTGCCC-TACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTT 94909 || ||| | ||| ||| || | |||| | | || || || | ||| | Sbjct 2058 -CTACCCGTTCGAAAGCCCCGAGGCTCAGCTGCTGAACATTCAAATCTTTGAGACCATCT 2116 Query 94910 ATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAA 94968 | |||| ||| | || | | | | | | ||||| | || ||| || |||| Sbjct 2117 ACTACGCCGCCCTGGAGGCGAGCTG-CGAGCTGGCC---GCTGAGCTCGGCCCCTACGAG 2172 Query 94969 TCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAG 95028 ||| | || || || | ||||||| | |||| |||| | |||| || | Sbjct 2173 ACGTACGAAGGCTCTCCGGTCAGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACG 2232 Query 95029 CCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGTGA 95086 ||| | | ||| |||||| | || || | | | || | ||| ||||| |||| Sbjct 2233 CCCACCGACCTGCTGGACTGGAAGGCCCTGAAGGAGAAGA--TCGCCAAGCACGGCGTGA 2290 Query 95087 AAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACA 95146 ||| ||||| ||||||| ||||||||||||||||| || |||||||| ||||||| Sbjct 2291 GGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACA 2350 Query 95147 ACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAAT 95206 ||||||| ||||| ||| |||| |||| | |||| | | |||||||| | || || | Sbjct 2351 ACGAGTCCATCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTGCTCTCGGGAGAGT 2410 Query 95207 TCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACA 95266 | | | | || ||||| || ||||||||| ||| ||||| | || Sbjct 2411 TTCAGATAGTGAATCCTCACCTGCTCAAAGACCTGACGGAGAGGGGACTGTGGAGCGAGG 2470 Query 95267 AGGTCAAGAACCAACTGCTACGCGC-CAACGGCTCCGTCCAG 95307 || | |||||||| ||| | ||| | |||||| ||||| ||| Sbjct 2471 AGATGAAGAACCAGCTGAT-CGCTCACAACGGGTCCGTTCAG 2511 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 93331 GTCATGTTCGACAAGATCACTACCAGGGTGCGCAAACTTTGCGAGGGTCTGGACTCTGAC 93390 ||||||||||| || ||||| | | | | || || ||| | || ||| || ||||| Sbjct 547 GTCATGTTCGATAAAATCACGTCTCGCATCCAGAAGCTGTGCTACGGGCTGAACCCTGAC 606 Query 93391 TTCGTGGATCCCGTCGAGGTCACCATGAGAGTGAATCAGGGAATATATGCCGGGGTCACA 93450 || |||||||| | || | || |||| |||| ||||| | || ||| |||||| Sbjct 607 TTTGTGGATCCGACCCAGATTACGATGAAGGTGATCCAGGGTTTGTACAGCGGCGTCACA 666 Query 93451 ACTGTCGAGCTCGATCTTCTGGCCGCGGAGACTTGTGCCTTCATGAGTACGAATCACCCG 93510 || || |||||||| |||||||| |||| ||| | | | || || ||||| Sbjct 667 ACCGTGGAGCTCGACACGCTGGCCGCAGAGATCGCCGCCACCCTCACAACCAAACACCCC 726 Query 93511 GACTACTCCATTTTGGCTGCTCGAATC 93537 |||||| |||| | ||||| || ||| Sbjct 727 GACTACGCCATCCTCGCTGCACGGATC 753 >seq25531 Length=26544 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 || ||||||| ||| ||||| |||||||||||||||| || || || || |||||| Sbjct 21239 CATGGTGTGAGGAACAGTCTGCTCTTGGCCCCCATGCCCACAGCTTCAACTGCCCAGATC 21180 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||| ||||| | || |||| |||| |||| | |||| | | |||||||| Sbjct 21179 CTGGGCAACAATGAGTCCATTGAGCCCTACACCAGCAACATCTACACCCGCAGGGTGCTC 21120 Query 95197 GCCGGGGAATTCCCCGTCATCA 95218 | || || || | |||| || Sbjct 21119 TCGGGAGAGTTTCAGGTCAGCA 21098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494506684391520