Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 221 1e-52
seq471 93.3 4e-14
>seq15996
Length=6831
Score = 221 bits (244), Expect = 1e-52
Identities = 913/1429 (64%), Gaps = 46/1429 (3%)
Strand=Plus/Minus
Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134
||||| ||| | | ||| | ||| ||||| ||||| || || || || |||| || ||
Sbjct 2378 TTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTG 2319
Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194
||||| |||| || || |||| || ||||||| || | |||||||
Sbjct 2318 GGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGG 2259
Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254
|||| ||| ||| ||| | | || ||| | ||||||||||||||| | | ||
Sbjct 2258 GCCTTCCAGTCCAGCAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCC 2199
Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGCA 153313
||| | ||| ||| | |||| |||| |||| || | |||||| |||||
Sbjct 2198 TTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCAGCGGCCAGCTCGCA 2140
Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373
||| ||||| || ||| | ||||| ||||| || |||||| | || || | ||
Sbjct 2139 GCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGC 2080
Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433
|| ||| ||| |||| ||||| || | |||||||| |||| |||||| | ||
Sbjct 2079 CTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCC 2020
Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTG-----CTGCGCCTCGCGCTCGCTATGGGATAG 153488
|| ||||| || | || || |||| || ||| || || | |||| |||
Sbjct 2019 GATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCAC----TGGG-TAG 1965
Query 153489 TGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGT 153548
| ||| |||||||| ||||| | ||| || | ||||| || | | |||
Sbjct 1964 TAGTTGATTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACAAACGCTAGT 1905
Query 153549 TTCTCGAAATCATAGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGC 153607
|| | || ||| | ||| || | | ||||| || || | || || || ||
Sbjct 1904 TTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTAC--ATG--TTGAGCGCGATGGAGGC 1849
Query 153608 CAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT 153667
||||||||| || || ||| ||| || | |||||| || || || | |||||||||
Sbjct 1848 CAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTT 1789
Query 153668 GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAA 153727
||||| ||| ||| ||||| ||| ||||| ||||| || | ||||| ||||||||| |
Sbjct 1788 GCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTA 1729
Query 153728 GAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT--------AAACCTATGC 153779
||||||||||| ||||| || || | |||| || | ||| |||
Sbjct 1728 CAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGGCGTGCCACACC--TGC 1671
Query 153780 AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGT 153839
| ||| | | ||| |||| || | ||||| |||| || ||||||
Sbjct 1670 TGAGCCTTCAC---CACGCGCT--TGA-CCCTCCCCTCCTTCTCATACGTGGTGTACAGC 1617
Query 153840 CGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGC 153899
||| ||||| || || |||| ||| | || ||||| |||| | ||||||||||||
Sbjct 1616 TTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGA 1557
Query 153900 GACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTAC 153959
||||| | || | | || | ||||||||| || || | ||| | |||||
Sbjct 1556 GACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAG 1497
Query 153960 ATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTA 154019
| ||||| | ||| | |||||| || |||| ||||| | || | | |
Sbjct 1496 AAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCA 1437
Query 154020 TAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCG 154076
| | |||| ||||||||| || | ||| | ||| | || || | | || ||
Sbjct 1436 AACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCT 1377
Query 154077 CCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTT 154136
||||| ||||||| ||| || | |||||| |||| | || |||||| | || ||| |
Sbjct 1376 CCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTG 1317
Query 154137 GCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTA--- 154193
| | |||||||||| ||| | ||| || || | |||||| | |
Sbjct 1316 GAGTTGCCGTTGGTGCCGGCGATGTAGCTCCC-----CGTCGATCGGATGCAGCTGACCG 1262
Query 154194 --ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGA 154251
||||| || || ||| | |||| || ||| || || | |||||| ||| |
Sbjct 1261 CCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAA 1202
Query 154252 TGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGC 154311
|||| |||||||| ||||| | | |||||| ||| || ||| || || ||
Sbjct 1201 TGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGT 1142
Query 154312 GCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGC 154371
|||||||| ||||| ||||| ||||| || ||| || | || || |
Sbjct 1141 TGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGT 1082
Query 154372 GGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGA 154431
|||||| || ||||| | ||| || ||| || |||| | || | |||||
Sbjct 1081 TGTACGTCTCAATGGCTGCGCTGATGTCCGTTTTGTGGATCCCGACAGATACTCTCATGA 1022
Query 154432 GCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATA 154480
|||||||||||||||| || || ||| | || |||||||| || ||
Sbjct 1021 GCATGTGCTGCGGACGCTCCGCCACTTTGCCGTTGATCTTCAACAGGTA 973
>seq471
Length=23154
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | ||| || ||| || || ||||| ||||
Sbjct 16835 GACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGTTTGCCGGCG 16776
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || | ||| |||||||| || || || || || || ||| || ||| |
Sbjct 16775 AAGATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTATCCTGGATCTTAGCTTTGACG 16716
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||||||| | | ||||||||| | || | || ||||| || || || ||
Sbjct 16715 TTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTGAGGGTCTTC 16656
Query 138601 ACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 16655 ACAAAGATCTGCAT 16642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496045210760640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |