Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq15996 221 1e-52 seq471 93.3 4e-14 >seq15996 Length=6831 Score = 221 bits (244), Expect = 1e-52 Identities = 913/1429 (64%), Gaps = 46/1429 (3%) Strand=Plus/Minus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | ||| | ||| ||||| ||||| || || || || |||| || || Sbjct 2378 TTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTG 2319 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 ||||| |||| || || |||| || ||||||| || | ||||||| Sbjct 2318 GGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGG 2259 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 |||| ||| ||| ||| | | || ||| | ||||||||||||||| | | || Sbjct 2258 GCCTTCCAGTCCAGCAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCC 2199 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGCA 153313 ||| | ||| ||| | |||| |||| |||| || | |||||| ||||| Sbjct 2198 TTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCAGCGGCCAGCTCGCA 2140 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| ||||| || ||| | ||||| ||||| || |||||| | || || | || Sbjct 2139 GCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGC 2080 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 || ||| ||| |||| ||||| || | |||||||| |||| |||||| | || Sbjct 2079 CTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCC 2020 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTG-----CTGCGCCTCGCGCTCGCTATGGGATAG 153488 || ||||| || | || || |||| || ||| || || | |||| ||| Sbjct 2019 GATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCAC----TGGG-TAG 1965 Query 153489 TGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGT 153548 | ||| |||||||| ||||| | ||| || | ||||| || | | ||| Sbjct 1964 TAGTTGATTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACAAACGCTAGT 1905 Query 153549 TTCTCGAAATCATAGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGC 153607 || | || ||| | ||| || | | ||||| || || | || || || || Sbjct 1904 TTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTAC--ATG--TTGAGCGCGATGGAGGC 1849 Query 153608 CAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT 153667 ||||||||| || || ||| ||| || | |||||| || || || | ||||||||| Sbjct 1848 CAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTT 1789 Query 153668 GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAA 153727 ||||| ||| ||| ||||| ||| ||||| ||||| || | ||||| ||||||||| | Sbjct 1788 GCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTA 1729 Query 153728 GAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT--------AAACCTATGC 153779 ||||||||||| ||||| || || | |||| || | ||| ||| Sbjct 1728 CAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGGCGTGCCACACC--TGC 1671 Query 153780 AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGT 153839 | ||| | | ||| |||| || | ||||| |||| || |||||| Sbjct 1670 TGAGCCTTCAC---CACGCGCT--TGA-CCCTCCCCTCCTTCTCATACGTGGTGTACAGC 1617 Query 153840 CGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGC 153899 ||| ||||| || || |||| ||| | || ||||| |||| | |||||||||||| Sbjct 1616 TTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGA 1557 Query 153900 GACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTAC 153959 ||||| | || | | || | ||||||||| || || | ||| | ||||| Sbjct 1556 GACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAG 1497 Query 153960 ATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTA 154019 | ||||| | ||| | |||||| || |||| ||||| | || | | | Sbjct 1496 AAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCA 1437 Query 154020 TAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCG 154076 | | |||| ||||||||| || | ||| | ||| | || || | | || || Sbjct 1436 AACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCT 1377 Query 154077 CCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTT 154136 ||||| ||||||| ||| || | |||||| |||| | || |||||| | || ||| | Sbjct 1376 CCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTG 1317 Query 154137 GCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTA--- 154193 | | |||||||||| ||| | ||| || || | |||||| | | Sbjct 1316 GAGTTGCCGTTGGTGCCGGCGATGTAGCTCCC-----CGTCGATCGGATGCAGCTGACCG 1262 Query 154194 --ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGA 154251 ||||| || || ||| | |||| || ||| || || | |||||| ||| | Sbjct 1261 CCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAA 1202 Query 154252 TGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGC 154311 |||| |||||||| ||||| | | |||||| ||| || ||| || || || Sbjct 1201 TGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGT 1142 Query 154312 GCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGC 154371 |||||||| ||||| ||||| ||||| || ||| || | || || | Sbjct 1141 TGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGT 1082 Query 154372 GGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGA 154431 |||||| || ||||| | ||| || ||| || |||| | || | ||||| Sbjct 1081 TGTACGTCTCAATGGCTGCGCTGATGTCCGTTTTGTGGATCCCGACAGATACTCTCATGA 1022 Query 154432 GCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATA 154480 |||||||||||||||| || || ||| | || |||||||| || || Sbjct 1021 GCATGTGCTGCGGACGCTCCGCCACTTTGCCGTTGATCTTCAACAGGTA 973 >seq471 Length=23154 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || ||| || || ||||| |||| Sbjct 16835 GACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCCAGCTGTTTGCCGGCG 16776 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| |||||||| || || || || || || ||| || ||| | Sbjct 16775 AAGATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTATCCTGGATCTTAGCTTTGACG 16716 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||||||||| | || | || ||||| || || || || Sbjct 16715 TTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTGAGGGTCTTC 16656 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 16655 ACAAAGATCTGCAT 16642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496045210760640