Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 134 1e-26
seq25531 87.8 2e-12
>seq15996
Length=6831
Score = 134 bits (148), Expect = 1e-26
Identities = 486/738 (66%), Gaps = 32/738 (4%)
Strand=Plus/Minus
Query 146065 TTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGC 146124
|| || | ||||||||| || | ||| || | | || | |||||||||| | |
Sbjct 2423 TTCACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCT 2364
Query 146125 TCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACC 146184
|||| ||||||||||| || || ||||| || || | || || ||||| |||| |
Sbjct 2363 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 2304
Query 146185 AGCAAAGAGTTTCTCACGCCGTGTCTTTGA-ATCTTTTCCCGTAGTTTGGAC--CAATTC 146241
|||| ||| ||||||||||| ||| | ||||| ||| || || | | | ||
Sbjct 2303 AGCAGGCTGTTCCTCACGCCGTG-CTTGGCGATCTTCTCCTTCAG---GGCCTTCCAGTC 2248
Query 146242 CACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCC---GCGGAAC 146298
|| | | || ||||| | | | ||||||| || | |||| || || |
Sbjct 2247 CAGCA--GGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACC 2190
Query 146299 AGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTT-GGCCAGTTCGCAGCTAGC 146357
| | || | |||||| || || || ||| | || |||||| |||||||| ||
Sbjct 2189 GGAGAGCCTT---CGTACGTCTCGTAGGGGCCGA-GCTCAGCGGCCAGCTCGCAGCTCGC 2134
Query 146358 TTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTA-GTTGACGCTCCTG-GCCTCC 146415
||||| || | |||| |||||||| ||| || | ||| | || ||| |||||
Sbjct 2133 CTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATT-TGAATGTTCA-GCAGCTGAGCCTCG 2076
Query 146416 TCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGAC 146474
||| ||| | ||| || || | || | |||||||| || | |||||| | ||||
Sbjct 2075 GGGCTTTCGAACGGG-TAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGAT 2017
Query 146475 ACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCG-CAGTGGGATAGTGGTTGC 146533
|| | || | ||| |||||| ||| | || | | || |||| |||| ||||
Sbjct 2016 TCCGATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGG-TAGTAGTTGA 1958
Query 146534 TGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCA--AACGATTCAGCAGGAC 146591
| ||||| |||||||| | || |||| | ||| |||| |||| | ||
Sbjct 1957 TTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACAAACGCT--AGTTTTTT 1900
Query 146592 ATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTT 146651
| ||||||| || | | | ||||| || |||||| ||||| ||||||| ||
Sbjct 1899 AAAGTCAAAAGTCCGC---TCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATT 1843
Query 146652 ACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCA 146711
||| || || ||| || | | | |||| || || || | ||||||||||||||
Sbjct 1842 ACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCT 1783
Query 146712 CTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCAT 146771
|||||| |||||| ||| | ||||| || | ||||||||| ||| ||||| |||||
Sbjct 1782 TTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCAT 1723
Query 146772 GTACGGTCCCCCGGTTTC 146789
|||||| ||||||||
Sbjct 1722 GTACGGCGTACCGGTTTC 1705
>seq25531
Length=26544
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739
|||| |||||||| | ||| || |||||| | |||||| |||||| ||| | |||||
Sbjct 22111 TACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTG 22170
Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777
|| | ||||||||| |||||||||||||||||| ||
Sbjct 22171 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGG 22208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475292697074880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |