Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq15996 134 1e-26 seq25531 87.8 2e-12 >seq15996 Length=6831 Score = 134 bits (148), Expect = 1e-26 Identities = 486/738 (66%), Gaps = 32/738 (4%) Strand=Plus/Minus Query 146065 TTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGC 146124 || || | ||||||||| || | ||| || | | || | |||||||||| | | Sbjct 2423 TTCACTATCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCT 2364 Query 146125 TCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACC 146184 |||| ||||||||||| || || ||||| || || | || || ||||| |||| | Sbjct 2363 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 2304 Query 146185 AGCAAAGAGTTTCTCACGCCGTGTCTTTGA-ATCTTTTCCCGTAGTTTGGAC--CAATTC 146241 |||| ||| ||||||||||| ||| | ||||| ||| || || | | | || Sbjct 2303 AGCAGGCTGTTCCTCACGCCGTG-CTTGGCGATCTTCTCCTTCAG---GGCCTTCCAGTC 2248 Query 146242 CACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCC---GCGGAAC 146298 || | | || ||||| | | | ||||||| || | |||| || || | Sbjct 2247 CAGCA--GGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACC 2190 Query 146299 AGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTT-GGCCAGTTCGCAGCTAGC 146357 | | || | |||||| || || || ||| | || |||||| |||||||| || Sbjct 2189 GGAGAGCCTT---CGTACGTCTCGTAGGGGCCGA-GCTCAGCGGCCAGCTCGCAGCTCGC 2134 Query 146358 TTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTA-GTTGACGCTCCTG-GCCTCC 146415 ||||| || | |||| |||||||| ||| || | ||| | || ||| ||||| Sbjct 2133 CTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATT-TGAATGTTCA-GCAGCTGAGCCTCG 2076 Query 146416 TCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGAC 146474 ||| ||| | ||| || || | || | |||||||| || | |||||| | |||| Sbjct 2075 GGGCTTTCGAACGGG-TAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGAT 2017 Query 146475 ACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCG-CAGTGGGATAGTGGTTGC 146533 || | || | ||| |||||| ||| | || | | || |||| |||| |||| Sbjct 2016 TCCGATCGGCCTGTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGG-TAGTAGTTGA 1958 Query 146534 TGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCA--AACGATTCAGCAGGAC 146591 | ||||| |||||||| | || |||| | ||| |||| |||| | || Sbjct 1957 TTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGTCACAAACGCT--AGTTTTTT 1900 Query 146592 ATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTT 146651 | ||||||| || | | | ||||| || |||||| ||||| ||||||| || Sbjct 1899 AAAGTCAAAAGTCCGC---TCAGGGGTGACGTACATGTTGAGCGCGATGGAGGCCAGATT 1843 Query 146652 ACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCA 146711 ||| || || ||| || | | | |||| || || || | |||||||||||||| Sbjct 1842 ACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCT 1783 Query 146712 CTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCAT 146771 |||||| |||||| ||| | ||||| || | ||||||||| ||| ||||| ||||| Sbjct 1782 TTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCAT 1723 Query 146772 GTACGGTCCCCCGGTTTC 146789 |||||| |||||||| Sbjct 1722 GTACGGCGTACCGGTTTC 1705 >seq25531 Length=26544 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| |||||||| | ||| || |||||| | |||||| |||||| ||| | ||||| Sbjct 22111 TACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTG 22170 Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 || | ||||||||| |||||||||||||||||| || Sbjct 22171 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGG 22208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475292697074880