Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq15996 159 3e-34 seq25531 89.7 5e-13 >seq15996 Length=6831 Score = 159 bits (176), Expect = 3e-34 Identities = 450/682 (66%), Gaps = 13/682 (2%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 |||||||| | || |||||||| |||||||||||||| |||||||||||||||||| Sbjct 1687 ATTATCGAGTCCCAGACGGAAACCGGTACGCCGTACATGCTGTACAAAGACGCCTGCAAC 1746 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 ||||| | ||| ||| || |||| || || ||| | || || || ||| | ||||| Sbjct 1747 AGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAAGCAGCAACCTCTGCACAGAAATA 1806 Query 123708 ATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG-TGAA 123766 | || |||| | | |||| | || || ||||||||| |||| || | | ||| | || Sbjct 1807 GTTGAGTACACCAGCGACGATGAGGTAGCGGTGTGTAATCTGGCCTCCA-TCGCGCTCAA 1865 Query 123767 TCGTTGCGTCGAAAACG-GCG--CTTTTAATTTCCAAACGCTCAAACG--CATAACAAAA 123821 | |||| | ||| ||||| | || ||| || | || | || ||| Sbjct 1866 CATGTACGTCACCCCTGAGCGGACTTTTGACTTTAAAAAACT--AGCGTTTGTGACCAAA 1923 Query 123822 ACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCG 123881 | || || || |||||||| |||||||| | || | || || || |||||| Sbjct 1924 GTCATCGTCAAAAACTTGAACAAGATTATCGAAATCAACTACTACCCAGTGCCTGAAGCG 1983 Query 123882 CGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCG 123941 ||| || | ||||| ||| ||||| | ||| | || || ||||| ||||| Sbjct 1984 GAGAAGTCCAACAAGCGCCACAGGCCGATCGGAATCGGCGTGCAGGGTTTGGCAGACGCC 2043 Query 123942 TTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATA 124001 || | | ||||| |||| ||||||| ||| || || |||| || | ||||| Sbjct 2044 TTCATCCTCATGCGCTACCCGTTCGAAAGCCCCGAGGCTCAGCTGCTGAACATTCAAATC 2103 Query 124002 GCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGC 124061 || || || || |||| ||| |||||||||||||||| || || | |||| Sbjct 2104 TTTGAGACCATCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCTGAGCTCGGC 2163 Query 124062 GCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGG 124121 | ||||| | |||| ||| |||| ||| || || | ||||||||||||||| Sbjct 2164 CCCTACGAGACGTACGAAGGCTCTCCGGTCAGCAAGGGCATCCTCCAGTACGACATGTGG 2223 Query 124122 AATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGC 124179 | || || || | || |||||||| | | || | | | |||| | || Sbjct 2224 GAGAAGACGCCCACCGACCTGCTGGACTGGAAGGCCCTGAAGGA--GAAGATCGCCAAGC 2281 Query 124180 ACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTT 124239 |||| || | ||| ||| || |||| ||||| ||||| |||| || || || Sbjct 2282 ACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCC 2341 Query 124240 TAGGAAACAACGAATCCTTCGA 124261 | || |||||||| ||| |||| Sbjct 2342 TGGGCAACAACGAGTCCATCGA 2363 >seq25531 Length=26544 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || ||||| ||||| |||||||||||||| ||||||||||||||||| | ||| ||| Sbjct 22220 GAGACCGGTACGCCTTACATGCTCTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAG 22161 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 || |||| || || |||| || ||||| ||| | || ||| | || |||| Sbjct 22160 AATCTGGGCACCATCAAATCCAGCAATCTGTGCACGGAGATTGTAGAGTACA 22109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451805380799520