Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 159 3e-34
seq25531 89.7 5e-13
>seq15996
Length=6831
Score = 159 bits (176), Expect = 3e-34
Identities = 450/682 (66%), Gaps = 13/682 (2%)
Strand=Plus/Plus
Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647
|||||||| | || |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1687 ATTATCGAGTCCCAGACGGAAACCGGTACGCCGTACATGCTGTACAAAGACGCCTGCAAC 1746
Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707
||||| | ||| ||| || |||| || || ||| | || || || ||| | |||||
Sbjct 1747 AGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAAAGCAGCAACCTCTGCACAGAAATA 1806
Query 123708 ATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG-TGAA 123766
| || |||| | | |||| | || || ||||||||| |||| || | | ||| | ||
Sbjct 1807 GTTGAGTACACCAGCGACGATGAGGTAGCGGTGTGTAATCTGGCCTCCA-TCGCGCTCAA 1865
Query 123767 TCGTTGCGTCGAAAACG-GCG--CTTTTAATTTCCAAACGCTCAAACG--CATAACAAAA 123821
| |||| | ||| ||||| | || ||| || | || | || |||
Sbjct 1866 CATGTACGTCACCCCTGAGCGGACTTTTGACTTTAAAAAACT--AGCGTTTGTGACCAAA 1923
Query 123822 ACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCG 123881
| || || || |||||||| |||||||| | || | || || || ||||||
Sbjct 1924 GTCATCGTCAAAAACTTGAACAAGATTATCGAAATCAACTACTACCCAGTGCCTGAAGCG 1983
Query 123882 CGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCG 123941
||| || | ||||| ||| ||||| | ||| | || || ||||| |||||
Sbjct 1984 GAGAAGTCCAACAAGCGCCACAGGCCGATCGGAATCGGCGTGCAGGGTTTGGCAGACGCC 2043
Query 123942 TTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATA 124001
|| | | ||||| |||| ||||||| ||| || || |||| || | |||||
Sbjct 2044 TTCATCCTCATGCGCTACCCGTTCGAAAGCCCCGAGGCTCAGCTGCTGAACATTCAAATC 2103
Query 124002 GCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGC 124061
|| || || || |||| ||| |||||||||||||||| || || | ||||
Sbjct 2104 TTTGAGACCATCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCTGAGCTCGGC 2163
Query 124062 GCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGG 124121
| ||||| | |||| ||| |||| ||| || || | |||||||||||||||
Sbjct 2164 CCCTACGAGACGTACGAAGGCTCTCCGGTCAGCAAGGGCATCCTCCAGTACGACATGTGG 2223
Query 124122 AATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGC 124179
| || || || | || |||||||| | | || | | | |||| | ||
Sbjct 2224 GAGAAGACGCCCACCGACCTGCTGGACTGGAAGGCCCTGAAGGA--GAAGATCGCCAAGC 2281
Query 124180 ACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTT 124239
|||| || | ||| ||| || |||| ||||| ||||| |||| || || ||
Sbjct 2282 ACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCC 2341
Query 124240 TAGGAAACAACGAATCCTTCGA 124261
| || |||||||| ||| ||||
Sbjct 2342 TGGGCAACAACGAGTCCATCGA 2363
>seq25531
Length=26544
Score = 89.7 bits (98), Expect = 5e-13
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665
|| ||||| ||||| |||||||||||||| ||||||||||||||||| | ||| |||
Sbjct 22220 GAGACCGGTACGCCTTACATGCTCTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAG 22161
Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717
|| |||| || || |||| || ||||| ||| | || ||| | || ||||
Sbjct 22160 AATCTGGGCACCATCAAATCCAGCAATCTGTGCACGGAGATTGTAGAGTACA 22109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451805380799520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |