Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq289 113 7e-20
seq27640 102 1e-16
>seq289
Length=55552
Score = 113 bits (124), Expect = 7e-20
Identities = 129/170 (76%), Gaps = 4/170 (2%)
Strand=Plus/Minus
Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611
|||||||| ||| | |||||| |||| ||||| |||||||||| || || ||||||||
Sbjct 24226 ATCAGGCATCAGTGGGTGCCAGTGGTACAGGGTGTTGAACTCGGATGCAATGCGGTTCTG 24167
Query 9612 GTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669
|||||| ||| || ||| |||||| | ||| |||||||| | |||| ||||| |||
Sbjct 24166 GTACTGGAAGCGCTGGT--TGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAGTTGTAG 24109
Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
||||| || ||||| || || | ||| | ||| || ||||| || ||
Sbjct 24108 CCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 24059
Score = 109 bits (120), Expect = 8e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995
||||| || || ||||| || || ||| || ||||| |||||||| ||||||||| |
Sbjct 25460 GCGGTGTTGACAATGTCGAAGCCCACGGTGCCACCGAATGTGCTGGGCTTCCAGTACTCT 25401
Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055
|||||||||||| ||| |||| | || || | ||| | || ||||||| ||| |
Sbjct 25400 GGGGAGCAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACC 25341
Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115
|| |||| || ||||||||| || | ||||| || || | | || | ||||||
Sbjct 25340 ATCGTCTCCCCAAAGATGGCATTAGGCCTGGGTTTCTCCACCAACAGTCCTGGGTAGAGC 25281
Query 9116 TCGACAGCCTCGACGTCGCCATA 9138
|| ||||| |||| || |||||
Sbjct 25280 TCCACAGCGTCGATGTGTCCATA 25258
>seq27640
Length=19633
Score = 102 bits (112), Expect = 1e-16
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022
|| || || |||||||| || ||||||||| | |||||||||||| ||| ||| ||
Sbjct 8497 TCTCCCCCAAAGGTGCTCGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTTCCCAGCAGG 8556
Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082
||||||| ||| || |||||||||| ||| | || |||||||| || ||| || ||
Sbjct 8557 CCTTTCAGGGAGAATGGAGCCCCCATCTCAACCATACTCTCACCAAATATGCCATTAGGG 8616
Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141
|| | ||||| | | | ||||| ||| | || | ||| || | || ||||||||
Sbjct 8617 CGTGCCTTTTCTAGTAAAAGGCCAGGGTAAAACTCCAAAGCATCTATATCACCATAGAG 8675
Score = 96.9 bits (106), Expect = 5e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 8939 GTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGG 8998
||||| ||||| | || || || || || |||||||| || ||||||||| | |||
Sbjct 17717 GTTTTGACGATATTGAAGCCAGTCTCTCCCCCAAAGGTGCTCGGCTTCCAGTACTCAGGG 17776
Query 8999 GAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATG 9058
||||||||| ||| ||| || ||||||| ||| || |||||||| | ||| | ||
Sbjct 17777 GAGCAGATGGGGTTTCCCAGCAGGCCTTTCAGGGAGAAGGGAGCCCCGATCTCAACCATA 17836
Query 9059 CTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCG 9118
|||||||| || ||| | | ||| | ||| || | | || || | ||| | ||
Sbjct 17837 CTCTCACCAAATATGCTGCTAGAACGTGTTTTCTCCAACAGGATACCGGGGTAAAACTCC 17896
Query 9119 ACAGCCTCGACGTCGCCATAGAG 9141
| ||| || | ||| ||||||||
Sbjct 17897 AAAGCATCTATGTCACCATAGAG 17919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723411260440800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |