Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq289 113 7e-20 seq27640 102 1e-16 >seq289 Length=55552 Score = 113 bits (124), Expect = 7e-20 Identities = 129/170 (76%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 |||||||| ||| | |||||| |||| ||||| |||||||||| || || |||||||| Sbjct 24226 ATCAGGCATCAGTGGGTGCCAGTGGTACAGGGTGTTGAACTCGGATGCAATGCGGTTCTG 24167 Query 9612 GTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| ||| || ||| |||||| | ||| |||||||| | |||| ||||| ||| Sbjct 24166 GTACTGGAAGCGCTGGT--TGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAGTTGTAG 24109 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||||| || ||||| || || | ||| | ||| || ||||| || || Sbjct 24108 CCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 24059 Score = 109 bits (120), Expect = 8e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || || ||||| || || ||| || ||||| |||||||| ||||||||| | Sbjct 25460 GCGGTGTTGACAATGTCGAAGCCCACGGTGCCACCGAATGTGCTGGGCTTCCAGTACTCT 25401 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| |||| | || || | ||| | || ||||||| ||| | Sbjct 25400 GGGGAGCAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACC 25341 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || |||| || ||||||||| || | ||||| || || | | || | |||||| Sbjct 25340 ATCGTCTCCCCAAAGATGGCATTAGGCCTGGGTTTCTCCACCAACAGTCCTGGGTAGAGC 25281 Query 9116 TCGACAGCCTCGACGTCGCCATA 9138 || ||||| |||| || ||||| Sbjct 25280 TCCACAGCGTCGATGTGTCCATA 25258 >seq27640 Length=19633 Score = 102 bits (112), Expect = 1e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || || |||||||| || ||||||||| | |||||||||||| ||| ||| || Sbjct 8497 TCTCCCCCAAAGGTGCTCGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTTCCCAGCAGG 8556 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 ||||||| ||| || |||||||||| ||| | || |||||||| || ||| || || Sbjct 8557 CCTTTCAGGGAGAATGGAGCCCCCATCTCAACCATACTCTCACCAAATATGCCATTAGGG 8616 Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 || | ||||| | | | ||||| ||| | || | ||| || | || |||||||| Sbjct 8617 CGTGCCTTTTCTAGTAAAAGGCCAGGGTAAAACTCCAAAGCATCTATATCACCATAGAG 8675 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 8939 GTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGG 8998 ||||| ||||| | || || || || || |||||||| || ||||||||| | ||| Sbjct 17717 GTTTTGACGATATTGAAGCCAGTCTCTCCCCCAAAGGTGCTCGGCTTCCAGTACTCAGGG 17776 Query 8999 GAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATG 9058 ||||||||| ||| ||| || ||||||| ||| || |||||||| | ||| | || Sbjct 17777 GAGCAGATGGGGTTTCCCAGCAGGCCTTTCAGGGAGAAGGGAGCCCCGATCTCAACCATA 17836 Query 9059 CTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCG 9118 |||||||| || ||| | | ||| | ||| || | | || || | ||| | || Sbjct 17837 CTCTCACCAAATATGCTGCTAGAACGTGTTTTCTCCAACAGGATACCGGGGTAAAACTCC 17896 Query 9119 ACAGCCTCGACGTCGCCATAGAG 9141 | ||| || | ||| |||||||| Sbjct 17897 AAAGCATCTATGTCACCATAGAG 17919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723411260440800