Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq15996 176 6e-39 seq25531 98.7 1e-15 >seq15996 Length=6831 Score = 176 bits (194), Expect = 6e-39 Identities = 841/1312 (64%), Gaps = 56/1312 (4%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | || | | |||| ||||| |||| ||| ||||| |||||| Sbjct 2384 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 2325 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || |||| || |||||||| | | || | || ||| Sbjct 2324 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 2265 Query 116023 TTGAGGGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076 || ||||| | |||||| || | || || |||| | |||||||| || || Sbjct 2264 TTCAGGGCCTTCCAGTCCAGCAGGTCGGTGGGC---GTCTTC---TCCCACATGTCGTAC 2211 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCC---CTCAACC 116133 |||||||| || | | | || || || || | ||||| || ||||| |||| | Sbjct 2210 TGGAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCG 2151 Query 116134 TCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA 116193 |||| ||| |||||||||| ||||| |||| || || |||||||| || || Sbjct 2150 ---GCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATG 2094 Query 116194 TTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCG 116253 |||| || |||||| | || |||| | || | || || | || || Sbjct 2093 TTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCC 2034 Query 116254 AGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTC 116312 | ||| || || |||| || || || | || | | | || ||||| || || | || Sbjct 2033 AAACCCTGCACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCTC---CGCT-TC 1978 Query 116313 ---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 116369 ||| || || | || | ||||||| | | || | |||||| || || || || Sbjct 1977 AGGCACTGGGTAGTAGTTGATTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGT 1918 Query 116370 GATTTCATGAAGCT--TTTCGTAA--TCAAAACTGCGAGTCTCTTCATTGACATACTTAG 116425 | || | ||| ||| ||| |||||| | || ||| |||| ||| | Sbjct 1917 CA---CAA-ACGCTAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGGTGACGTACATGT 1865 Query 116426 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 116485 || ||||| || |||||||||||||| | |||||| | |||||||| | | Sbjct 1864 TGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTA 1805 Query 116486 TTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 116545 |||| || || | || || || |||||||||| |||| || || ||| ||| Sbjct 1804 TTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGT 1745 Query 116546 TACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAG 116605 | || || || ||||| ||||| || ||||| || || ||||| ||||||| || ||| | Sbjct 1744 TGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGG 1685 Query 116606 CCTTCCATACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTT 116664 | | ||| || | | | | || ||| | ||| | | |||||||| ||| ||| | Sbjct 1684 CGTGCCACACCTGCTGAGCCT-TCACCACGCGCTTGACCCTCCCCTCCTTCTCATACGTG 1626 Query 116665 GTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGG 116723 ||||| || ||| ||||| || ||| |||| ||| ||||| || || | || Sbjct 1625 GTGTACAGCTTCTCGAACTCCTC-CCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGG 1567 Query 116724 ACAGAAGAGAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGAT 116780 ||| | |||||||| ||| | |||| || | ||||||||| ||||| ||||| Sbjct 1566 ACACATCAGAGACCAGTCTTGGTTGCTCTCC---ACTCTCTTCATGAACAGGTCGGGGAT 1510 Query 116781 CCAGAGCGCCGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 116839 ||| | || |||| || || | | | ||| || | | || || || || Sbjct 1509 CCACATGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTG-TTCTTCTTCA 1451 Query 116840 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 116899 ||||| ||||| | | || |||||| || |||||||||| || | | | || Sbjct 1450 GCTCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACG-CTCCG 1392 Query 116900 TGCGAC----GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATT 116955 || | || |||||| || || | |||||| ||| | || | ||||| Sbjct 1391 GGCCTCTTGTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATG 1332 Query 116956 GGAATGATACCATCAGATTGGCCATTTGT-CCCCCGAATACGAGACTTGTTGGCTCTGAC 117014 || | || || | || | ||| || || || ||| | | | | | || || Sbjct 1331 GGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCG-TCGATCGGAT 1273 Query 117015 ATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAG 117074 | || || || || ||||| ||| |||| ||||| | || |||| | | || Sbjct 1272 GCAGCTGACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAG 1213 Query 117075 ACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACAT 117134 || |||| || || ||||| ||| |||| | |||| ||||||||||| |||| Sbjct 1212 CGTGTCGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAG 1153 Query 117135 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 |||||||| || || ||||||||||| || || | |||||| ||||| Sbjct 1152 CTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC 1101 >seq25531 Length=26544 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| ||||||| | |||||||||| |||| ||| ||||| || || Sbjct 21136 TAGATGTTGCTGGTGTAGGGCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTTGAA 21195 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||| ||| || ||||| Sbjct 21196 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 21227 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/126 (75%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 116473 GTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTT 116530 |||||||||| ||| ||||| |||| ||| || | | | |||||||||| |||| | Sbjct 22108 GTGTACTCTACAATCTCCGTGCACAGATTGCTGGATT--TGATGGTGCCCAGATTCTGCT 22165 Query 116531 GATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTT 116590 | || ||| |||| || || |||||||||||||| || ||||| || ||||| || | Sbjct 22166 GGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTACCGGTCTCTGTCT 22225 Query 116591 GGGACT 116596 | |||| Sbjct 22226 GAGACT 22231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613238698573920