Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 176 6e-39
seq25531 98.7 1e-15
>seq15996
Length=6831
Score = 176 bits (194), Expect = 6e-39
Identities = 841/1312 (64%), Gaps = 56/1312 (4%)
Strand=Plus/Minus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
||||||||| | ||||| | || | | |||| ||||| |||| ||| ||||| ||||||
Sbjct 2384 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 2325
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022
|| |||||||| || |||| || |||||||| | | || | || |||
Sbjct 2324 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 2265
Query 116023 TTGAGGGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076
|| ||||| | |||||| || | || || |||| | |||||||| || ||
Sbjct 2264 TTCAGGGCCTTCCAGTCCAGCAGGTCGGTGGGC---GTCTTC---TCCCACATGTCGTAC 2211
Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCC---CTCAACC 116133
|||||||| || | | | || || || || | ||||| || ||||| |||| |
Sbjct 2210 TGGAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCG 2151
Query 116134 TCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA 116193
|||| ||| |||||||||| ||||| |||| || || |||||||| || ||
Sbjct 2150 ---GCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATG 2094
Query 116194 TTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCG 116253
|||| || |||||| | || |||| | || | || || | || ||
Sbjct 2093 TTCAGCAGCTGAGCCTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCC 2034
Query 116254 AGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTC 116312
| ||| || || |||| || || || | || | | | || ||||| || || | ||
Sbjct 2033 AAACCCTGCACGCCGATTCCGATCGGCCTGTGGCGCTTGTTGGACTTCTC---CGCT-TC 1978
Query 116313 ---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 116369
||| || || | || | ||||||| | | || | |||||| || || || ||
Sbjct 1977 AGGCACTGGGTAGTAGTTGATTTCGATAATCTTGTTCAAGTTTTTGACGATGACTTTGGT 1918
Query 116370 GATTTCATGAAGCT--TTTCGTAA--TCAAAACTGCGAGTCTCTTCATTGACATACTTAG 116425
| || | ||| ||| ||| |||||| | || ||| |||| ||| |
Sbjct 1917 CA---CAA-ACGCTAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGGTGACGTACATGT 1865
Query 116426 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 116485
|| ||||| || |||||||||||||| | |||||| | |||||||| | |
Sbjct 1864 TGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTA 1805
Query 116486 TTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 116545
|||| || || | || || || |||||||||| |||| || || ||| |||
Sbjct 1804 TTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGT 1745
Query 116546 TACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAG 116605
| || || || ||||| ||||| || ||||| || || ||||| ||||||| || ||| |
Sbjct 1744 TGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGG 1685
Query 116606 CCTTCCATACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTT 116664
| | ||| || | | | | || ||| | ||| | | |||||||| ||| ||| |
Sbjct 1684 CGTGCCACACCTGCTGAGCCT-TCACCACGCGCTTGACCCTCCCCTCCTTCTCATACGTG 1626
Query 116665 GTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGG 116723
||||| || ||| ||||| || ||| |||| ||| ||||| || || | ||
Sbjct 1625 GTGTACAGCTTCTCGAACTCCTC-CCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGG 1567
Query 116724 ACAGAAGAGAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGAT 116780
||| | |||||||| ||| | |||| || | ||||||||| ||||| |||||
Sbjct 1566 ACACATCAGAGACCAGTCTTGGTTGCTCTCC---ACTCTCTTCATGAACAGGTCGGGGAT 1510
Query 116781 CCAGAGCGCCGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 116839
||| | || |||| || || | | | ||| || | | || || || ||
Sbjct 1509 CCACATGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTG-TTCTTCTTCA 1451
Query 116840 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCT 116899
||||| ||||| | | || |||||| || |||||||||| || | | | ||
Sbjct 1450 GCTCCAGGAAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACG-CTCCG 1392
Query 116900 TGCGAC----GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATT 116955
|| | || |||||| || || | |||||| ||| | || | |||||
Sbjct 1391 GGCCTCTTGTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATG 1332
Query 116956 GGAATGATACCATCAGATTGGCCATTTGT-CCCCCGAATACGAGACTTGTTGGCTCTGAC 117014
|| | || || | || | ||| || || || ||| | | | | | || ||
Sbjct 1331 GGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCG-TCGATCGGAT 1273
Query 117015 ATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAG 117074
| || || || || ||||| ||| |||| ||||| | || |||| | | ||
Sbjct 1272 GCAGCTGACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAG 1213
Query 117075 ACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACAT 117134
|| |||| || || ||||| ||| |||| | |||| ||||||||||| ||||
Sbjct 1212 CGTGTCGTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAG 1153
Query 117135 TTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186
|||||||| || || ||||||||||| || || | |||||| |||||
Sbjct 1152 CTGTGGCCTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC 1101
>seq25531
Length=26544
Score = 98.7 bits (108), Expect = 1e-15
Identities = 77/92 (84%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
||||||||| | ||||| ||||||| | |||||||||| |||| ||| ||||| || ||
Sbjct 21136 TAGATGTTGCTGGTGTAGGGCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTTGAA 21195
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994
|||||||||||||| |||| ||| || |||||
Sbjct 21196 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 21227
Score = 82.4 bits (90), Expect = 9e-11
Identities = 95/126 (75%), Gaps = 4/126 (3%)
Strand=Plus/Plus
Query 116473 GTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTT 116530
|||||||||| ||| ||||| |||| ||| || | | | |||||||||| |||| |
Sbjct 22108 GTGTACTCTACAATCTCCGTGCACAGATTGCTGGATT--TGATGGTGCCCAGATTCTGCT 22165
Query 116531 GATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTT 116590
| || ||| |||| || || |||||||||||||| || ||||| || ||||| || |
Sbjct 22166 GGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTACCGGTCTCTGTCT 22225
Query 116591 GGGACT 116596
| ||||
Sbjct 22226 GAGACT 22231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613238698573920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |