Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 214 3e-50
seq25531 98.7 2e-15
seq4570 87.8 3e-12
>seq15996
Length=6831
Score = 214 bits (236), Expect = 3e-50
Identities = 521/775 (67%), Gaps = 26/775 (3%)
Strand=Plus/Minus
Query 204841 GGCGGCCAGATTGCACACCGCGGG-TCTGTGTGGCTCGCTCACCTCCACGATCTCGGTGC 204899
|| ||||||||| |||||||| || || ||| | || || || || || ||||
Sbjct 1854 GGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTAC-TCAACTATTTCTGTGC 1796
Query 204900 ACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGT 204959
| | ||| | || || | |||| || ||||||||| ||| | ||| |||| ||
Sbjct 1795 AGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 1736
Query 204960 CCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCGCAGAATGTGGGTCCAC 205018
| ||||||| |||| ||||| | ||| | ||| |||| || ||| | |||| | ||||
Sbjct 1735 CTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCG-ATAATGGCGTGCCAC 1677
Query 205019 AATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGACTCGTATTTTGTGTAC 205075
| | |||||| |||| |||| || | |||| | ||| || | ||||||
Sbjct 1676 ACCTGCTGAGCCTTCACCACGCGCTTGAC---CCTCCCCTCCTTCTCATACGTGGTGTAC 1620
Query 205076 AGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGGACATTTTTTGGGACAC 205132
||| | | || || || | || |||||| |||| || || | || ||||||
Sbjct 1619 AGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCA---GCCCGGGGCACTCGTTCGGACAC 1563
Query 205133 ATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAGG 205192
||||||||||| || | | | ||| |||| ||| ||||||||| |||||||| |
Sbjct 1562 ATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACATG 1503
Query 205193 CCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGC 205252
|||| || || || | |||||| | || | ||| |||||| |||| |||||
Sbjct 1502 GCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGG 1443
Query 205253 CAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTT 205311
||| | | | |||| |||||| ||||| | ||| ||| | || || ||||||||
Sbjct 1442 -AAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTT 1384
Query 205312 GTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAG 205371
||| || |||||||| || || | | | |||| | |||| |||||| || || ||
Sbjct 1383 GTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAG 1324
Query 205372 ACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGAT 205431
||||||| | | ||||| |||| | |||| ||| | | | | || || |
Sbjct 1323 CCCGTTGGAGTTGCCGTTGGTGCCGGCGATG---TAGCTCCCCGTCGATCGGATGCAGCT 1267
Query 205432 G---GCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAGAGTGCT 205488
| ||| |||| || || || | |||||| ||| |||| |||| | ||| |||
Sbjct 1266 GACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTC 1207
Query 205489 GTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCT-TGG 205547
||| |||||| ||||| |||||| || | | ||| |||| | ||||| |||
Sbjct 1206 GTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGG 1147
Query 205548 CAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTC 205602
| |||||| ||||||| ||||||||||||| ||||||| |||| | ||||||
Sbjct 1146 C-CTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTC 1093
Score = 188 bits (208), Expect = 1e-42
Identities = 353/513 (69%), Gaps = 7/513 (1%)
Strand=Plus/Minus
Query 204100 CCTGATCG-AGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158
||||| || | ||||||| || ||||| || || ||||||| | ||||| |||
Sbjct 2512 CCTGAACGGACCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGTCCCC 2453
Query 204159 ACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCC 204218
| |||| || | |||||| || || | |||||||| ||||| || |||||||
Sbjct 2452 TCTCCGTCAGGTCTTTGAGCAGGTGAGGATTCACTATCTGAAACTCTCCCGAGAGCACCC 2393
Query 204219 CTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAG 204278
|||||| | | |||| ||||| | | ||||| | |||||||||||| | ||||| |
Sbjct 2392 TGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGG 2333
Query 204279 CGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGA 204338
||||| |||||||||||| || ||||| |||||| ||| | ||| |||| || ||
Sbjct 2332 CGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGA 2273
Query 204339 CCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGA 204398
| | |||||| | ||||||| ||| | |||| || |||||||||||
Sbjct 2272 TCTTCTCCTTCAGGGCCTTCCAGTCCAGCAGGTCGGTGGGCGTCTTCTCCCACATGTCGT 2213
Query 204399 ACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTCT 204457
|||| | |||||| | ||||| || ||| | ||||||| || ||| || |||
Sbjct 2212 ACTGGAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCA 2154
Query 204458 TCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACG 204517
| ||||||| ||| || ||| |||| ||||| |||||||||||||| |||| |
Sbjct 2153 GCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATG 2094
Query 204518 TTTA--ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCG 204575
|| | | ||| ||||| | | || |||| | || | | || |||| |
Sbjct 2093 TTCAGCAGCTG--AGCCTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTG 2036
Query 204576 CCAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608
|||| |||||||| |||||||| | ||| ||||
Sbjct 2035 CCAAACCCTGCACGCCGATTCCGATCGGCCTGT 2003
Score = 132 bits (146), Expect = 8e-26
Identities = 118/145 (81%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976
||| ||||| | ||||||| | |||||||| |||||| ||||| ||||| |||||
Sbjct 3267 CCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCGGCGATGTGGATGTT 3208
Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035
|||||||||||| ||||||||||| |||||| || || |||||||| |||| |||||||
Sbjct 3207 CAGAGACTGGCTCTGGTCGATGAA-GGCGCCGCGGTCGGCGGCCATCTTGAGTATGGTCT 3149
Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060
|||| || || |||||||| || ||
Sbjct 3148 TCTGGGAGATTTCCCACACGGTTTT 3124
>seq25531
Length=26544
Score = 98.7 bits (108), Expect = 2e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973
|| ||| ||||| | ||||||| | |||||||| ||| || || || || || ||
Sbjct 20517 CTTCCAACCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGTTCAGCAATATGGAT 20576
Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGT 204033
||| || ||||| || ||||| ||| ||| | |||||||| ||||| |||| |||||
Sbjct 20577 GTTTAGGGACTGACTCTGGTCAATGTAAGCACCACGATCTGCTGCCATCTTGAGGATGGT 20636
Query 204034 CTTCTGCGAAATCTCCCACACCGTCTT 204060
|||||| || || |||||||| || ||
Sbjct 20637 CTTCTGTGAGATTTCCCACACAGTTTT 20663
Score = 89.7 bits (98), Expect = 8e-13
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248
|| ||| |||||| ||||| || ||||||| |||||| | | |||| ||||| | || |
Sbjct 21098 TGCTGACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCT 21157
Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308
| | | ||| |||||||| | ||||| || || || ||||||||||| |||| ||
Sbjct 21158 CAATGGACTCATTGTTGCCCAGGATCTGGGCAGTTGAAGCTGTGGGCATGGGGGCCAAGA 21217
Query 204309 GCAGGGAGTTGCGCACACC 204327
|||| ||| | ||||||
Sbjct 21218 GCAGACTGTTCCTCACACC 21236
>seq4570
Length=64532
Score = 87.8 bits (96), Expect = 3e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 200181 TTTTGTTTACAGACTGGTTCCGGAGTACATGGACCCTGCAGGATGACCCTTGTAAAAAAT 200240
|||| ||| |||| |||||| | || || ||||| || || |||||||||||||| ||||
Sbjct 62121 TTTTTTTTGCAGAGTGGTTCAGAAGCACCTGGACTCTTCAAGATGACCCTTGTAAGAAAT 62062
Query 200241 ATCACGAAGTGCTCATTATCAACCCCGTTCTATTAGTCCCTCCAACCAAGG 200291
| | ||| | ||||| ||||||| |||| | || ||||| |||||||
Sbjct 62061 ACTATGAACTTCTCATGGTCAACCCTATTCTGCTGGTACCTCCTACCAAGG 62011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794807200326720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |