Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq15996 214 3e-50 seq25531 98.7 2e-15 seq4570 87.8 3e-12 >seq15996 Length=6831 Score = 214 bits (236), Expect = 3e-50 Identities = 521/775 (67%), Gaps = 26/775 (3%) Strand=Plus/Minus Query 204841 GGCGGCCAGATTGCACACCGCGGG-TCTGTGTGGCTCGCTCACCTCCACGATCTCGGTGC 204899 || ||||||||| |||||||| || || ||| | || || || || || |||| Sbjct 1854 GGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTAC-TCAACTATTTCTGTGC 1796 Query 204900 ACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGT 204959 | | ||| | || || | |||| || ||||||||| ||| | ||| |||| || Sbjct 1795 AGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 1736 Query 204960 CCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCGCAGAATGTGGGTCCAC 205018 | ||||||| |||| ||||| | ||| | ||| |||| || ||| | |||| | |||| Sbjct 1735 CTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCG-ATAATGGCGTGCCAC 1677 Query 205019 AATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGACTCGTATTTTGTGTAC 205075 | | |||||| |||| |||| || | |||| | ||| || | |||||| Sbjct 1676 ACCTGCTGAGCCTTCACCACGCGCTTGAC---CCTCCCCTCCTTCTCATACGTGGTGTAC 1620 Query 205076 AGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGGACATTTTTTGGGACAC 205132 ||| | | || || || | || |||||| |||| || || | || |||||| Sbjct 1619 AGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCA---GCCCGGGGCACTCGTTCGGACAC 1563 Query 205133 ATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAGG 205192 ||||||||||| || | | | ||| |||| ||| ||||||||| |||||||| | Sbjct 1562 ATCAGAGACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACATG 1503 Query 205193 CCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGC 205252 |||| || || || | |||||| | || | ||| |||||| |||| ||||| Sbjct 1502 GCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGG 1443 Query 205253 CAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTT 205311 ||| | | | |||| |||||| ||||| | ||| ||| | || || |||||||| Sbjct 1442 -AAGTCAAACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTT 1384 Query 205312 GTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAG 205371 ||| || |||||||| || || | | | |||| | |||| |||||| || || || Sbjct 1383 GTTGCCTCCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAG 1324 Query 205372 ACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGAT 205431 ||||||| | | ||||| |||| | |||| ||| | | | | || || | Sbjct 1323 CCCGTTGGAGTTGCCGTTGGTGCCGGCGATG---TAGCTCCCCGTCGATCGGATGCAGCT 1267 Query 205432 G---GCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAGAGTGCT 205488 | ||| |||| || || || | |||||| ||| |||| |||| | ||| ||| Sbjct 1266 GACCGCCACGCCGATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTC 1207 Query 205489 GTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCT-TGG 205547 ||| |||||| ||||| |||||| || | | ||| |||| | ||||| ||| Sbjct 1206 GTAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGG 1147 Query 205548 CAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTC 205602 | |||||| ||||||| ||||||||||||| ||||||| |||| | |||||| Sbjct 1146 C-CTGTTGGTTCCCGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTC 1093 Score = 188 bits (208), Expect = 1e-42 Identities = 353/513 (69%), Gaps = 7/513 (1%) Strand=Plus/Minus Query 204100 CCTGATCG-AGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| || | ||||||| || ||||| || || ||||||| | ||||| ||| Sbjct 2512 CCTGAACGGACCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGTCCCC 2453 Query 204159 ACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCC 204218 | |||| || | |||||| || || | |||||||| ||||| || ||||||| Sbjct 2452 TCTCCGTCAGGTCTTTGAGCAGGTGAGGATTCACTATCTGAAACTCTCCCGAGAGCACCC 2393 Query 204219 CTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAG 204278 |||||| | | |||| ||||| | | ||||| | |||||||||||| | ||||| | Sbjct 2392 TGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGG 2333 Query 204279 CGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGA 204338 ||||| |||||||||||| || ||||| |||||| ||| | ||| |||| || || Sbjct 2332 CGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGA 2273 Query 204339 CCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGA 204398 | | |||||| | ||||||| ||| | |||| || ||||||||||| Sbjct 2272 TCTTCTCCTTCAGGGCCTTCCAGTCCAGCAGGTCGGTGGGCGTCTTCTCCCACATGTCGT 2213 Query 204399 ACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTCT 204457 |||| | |||||| | ||||| || ||| | ||||||| || ||| || ||| Sbjct 2212 ACTGGAGGATGCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGA-GCTCA 2154 Query 204458 TCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACG 204517 | ||||||| ||| || ||| |||| ||||| |||||||||||||| |||| | Sbjct 2153 GCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATG 2094 Query 204518 TTTA--ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCG 204575 || | | ||| ||||| | | || |||| | || | | || |||| | Sbjct 2093 TTCAGCAGCTG--AGCCTCGGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTG 2036 Query 204576 CCAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608 |||| |||||||| |||||||| | ||| |||| Sbjct 2035 CCAAACCCTGCACGCCGATTCCGATCGGCCTGT 2003 Score = 132 bits (146), Expect = 8e-26 Identities = 118/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | ||||||| | |||||||| |||||| ||||| ||||| ||||| Sbjct 3267 CCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCGGCGATGTGGATGTT 3208 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 |||||||||||| ||||||||||| |||||| || || |||||||| |||| ||||||| Sbjct 3207 CAGAGACTGGCTCTGGTCGATGAA-GGCGCCGCGGTCGGCGGCCATCTTGAGTATGGTCT 3149 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || || |||||||| || || Sbjct 3148 TCTGGGAGATTTCCCACACGGTTTT 3124 >seq25531 Length=26544 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| ||||| | ||||||| | |||||||| ||| || || || || || || Sbjct 20517 CTTCCAACCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGTTCAGCAATATGGAT 20576 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGT 204033 ||| || ||||| || ||||| ||| ||| | |||||||| ||||| |||| ||||| Sbjct 20577 GTTTAGGGACTGACTCTGGTCAATGTAAGCACCACGATCTGCTGCCATCTTGAGGATGGT 20636 Query 204034 CTTCTGCGAAATCTCCCACACCGTCTT 204060 |||||| || || |||||||| || || Sbjct 20637 CTTCTGTGAGATTTCCCACACAGTTTT 20663 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 || ||| |||||| ||||| || ||||||| |||||| | | |||| ||||| | || | Sbjct 21098 TGCTGACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCT 21157 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 | | | ||| |||||||| | ||||| || || || ||||||||||| |||| || Sbjct 21158 CAATGGACTCATTGTTGCCCAGGATCTGGGCAGTTGAAGCTGTGGGCATGGGGGCCAAGA 21217 Query 204309 GCAGGGAGTTGCGCACACC 204327 |||| ||| | |||||| Sbjct 21218 GCAGACTGTTCCTCACACC 21236 >seq4570 Length=64532 Score = 87.8 bits (96), Expect = 3e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 200181 TTTTGTTTACAGACTGGTTCCGGAGTACATGGACCCTGCAGGATGACCCTTGTAAAAAAT 200240 |||| ||| |||| |||||| | || || ||||| || || |||||||||||||| |||| Sbjct 62121 TTTTTTTTGCAGAGTGGTTCAGAAGCACCTGGACTCTTCAAGATGACCCTTGTAAGAAAT 62062 Query 200241 ATCACGAAGTGCTCATTATCAACCCCGTTCTATTAGTCCCTCCAACCAAGG 200291 | | ||| | ||||| ||||||| |||| | || ||||| ||||||| Sbjct 62061 ACTATGAACTTCTCATGGTCAACCCTATTCTGCTGGTACCTCCTACCAAGG 62011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794807200326720