Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq471 149 6e-31
seq30050 114 1e-20
>seq471
Length=23154
Score = 149 bits (164), Expect = 6e-31
Identities = 173/231 (75%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || || || || || ||||| || || ||||||||| | || || ||| ||
Sbjct 16639 AAGATGCAGATCTTTGTGAAGACCCTCACCGGTAAGACCATCACCCTGGAGGTGGAGCCC 16698
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| ||||| | | | |||| | |||| || |||| || || |||||||| ||| | ||
Sbjct 16699 AGCGACACCATCGAGAACG-TCAAAGCTAAGATCCAGGATAAGGAGGGAATCCCCCCGGA 16757
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||| |||| || | ||| |||||||||||||| |||| ||||| ||| ||||||
Sbjct 16758 CCAGCAGAGGCTGATCTTCGCCGGCAAACAGCTGGAAGACGGCCGCACTCTCTCCGACTA 16817
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||||| ||||| | || || || ||||||| || |||| || ||
Sbjct 16818 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGG 16868
>seq30050
Length=2981
Score = 114 bits (126), Expect = 1e-20
Identities = 100/122 (82%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338
||||| || ||||||||||||||||||||||||||||| ||||||| ||||||| ||||
Sbjct 1025 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGCGAGATG 966
Query 133339 AAATGGCGCTCGTTGTCGTTCA-AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397
|| | ||| | ||| |||| ||| |||||||| || |||||||||||| |||||
Sbjct 965 AAGAACCTCTCCTCGTCCTTCAGAGC-CTCCCAGTGCTGCAGGTCCTTGGACAGATCCAC 907
Query 133398 CT 133399
||
Sbjct 906 CT 905
Score = 89.7 bits (98), Expect = 5e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAA 133455
|||||||| ||||||| |||||||||||||| || |||||||| ||| |||||
Sbjct 788 ACCTCCTCTGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 729
Query 133456 TATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509
|| | ||||| || || || || ||||| |||||||| || ||||||||||
Sbjct 728 TACTTGATGGGGAAGATGACGAAGCGGCGAGGGTTTTCCTTCAGCAGCGGCTCC 675
Score = 86.0 bits (94), Expect = 6e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
|||||||| ||||||| ||||| || ||||| | ||||||||||||||| || ||
Sbjct 2924 GTAGGTGTTGATGAGGAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAA 2865
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281
|| || || |||| ||||| |||||||||||| || | ||| ||||| |||
Sbjct 2864 ACCATAGAAACACCTGGCCTCCGTCACCTGCACTTCCTGTGTGAAGCGCTCCACC 2810
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499953899374080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |