Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq471 149 6e-31 seq30050 114 1e-20 >seq471 Length=23154 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || ||||| || || ||||||||| | || || ||| || Sbjct 16639 AAGATGCAGATCTTTGTGAAGACCCTCACCGGTAAGACCATCACCCTGGAGGTGGAGCCC 16698 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | | | |||| | |||| || |||| || || |||||||| ||| | || Sbjct 16699 AGCGACACCATCGAGAACG-TCAAAGCTAAGATCCAGGATAAGGAGGGAATCCCCCCGGA 16757 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | ||| |||||||||||||| |||| ||||| ||| |||||| Sbjct 16758 CCAGCAGAGGCTGATCTTCGCCGGCAAACAGCTGGAAGACGGCCGCACTCTCTCCGACTA 16817 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || || || ||||||| || |||| || || Sbjct 16818 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGG 16868 >seq30050 Length=2981 Score = 114 bits (126), Expect = 1e-20 Identities = 100/122 (82%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||||||||| ||||||| ||||||| |||| Sbjct 1025 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGCGAGATG 966 Query 133339 AAATGGCGCTCGTTGTCGTTCA-AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 || | ||| | ||| |||| ||| |||||||| || |||||||||||| ||||| Sbjct 965 AAGAACCTCTCCTCGTCCTTCAGAGC-CTCCCAGTGCTGCAGGTCCTTGGACAGATCCAC 907 Query 133398 CT 133399 || Sbjct 906 CT 905 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAA 133455 |||||||| ||||||| |||||||||||||| || |||||||| ||| ||||| Sbjct 788 ACCTCCTCTGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 729 Query 133456 TATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || | ||||| || || || || ||||| |||||||| || |||||||||| Sbjct 728 TACTTGATGGGGAAGATGACGAAGCGGCGAGGGTTTTCCTTCAGCAGCGGCTCC 675 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||| ||||||| ||||| || ||||| | ||||||||||||||| || || Sbjct 2924 GTAGGTGTTGATGAGGAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAA 2865 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 || || || |||| ||||| |||||||||||| || | ||| ||||| ||| Sbjct 2864 ACCATAGAAACACCTGGCCTCCGTCACCTGCACTTCCTGTGTGAAGCGCTCCACC 2810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499953899374080