Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq12683 190 2e-42 seq5514 107 1e-17 >seq12683 Length=55699 Score = 190 bits (210), Expect = 2e-42 Identities = 939/1474 (64%), Gaps = 22/1474 (1%) Strand=Plus/Plus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| || |||| | |||||| ||||| || |||||||| | || || || || || | Sbjct 9122 TTTGTCGACGGCGGACACATTCAGAATGCCGTTGGCATCGATGTCGAAAGTTACCTCCAC 9181 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 || || || |||| |||| || ||||| ||| | | ||| | ||||| || Sbjct 9182 CTGTGGTACACCTCGGGGAGCTGGAGGGATACCTGTGAGCTCAAACTTGCCCAGGAGGTT 9241 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 || || || || | || ||||||||| | | || || || | | || || Sbjct 9242 GTTGTCCTTGGTCATGGCTCTCTCACCCTCGTACACCTGAATCAGCACACCTGGCTGGTT 9301 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAA 517487 ||| || || || | || ||||| | | ||| || || || ||||| | | | Sbjct 9302 ATCCGAGTATGTGGAGAAGG-TCTGGGTCTGTTTGGTGGGGATGGTGGTGTTGCGTTTGA 9360 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 | | | ||||||| |||||||| || || | || ||||| || |||| || || | Sbjct 9361 TTAGAGGCGTCATAACTCCACCTGCAGTCTCAATGCCCAGAGACAGGGGAGCCACGTCCA 9420 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 || | | || ||| | || || ||| | ||| | || ||||| || || | || Sbjct 9421 GCAGCAGCAGATCTTGGACGTTCTCGGAAGTGTCACCCATGAGGATAGCAGCCTGGACAG 9480 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 ||||||| || || || |||||||| || || | | | || || | | || || | Sbjct 9481 CAGCACCGTAGGCCACGGCTTCATCTGGGTTGATGCTCTTGTTCAGGTCCCTGCCGTTAA 9540 Query 517668 AAAAATT-TGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATAC 517725 |||| | || || ||| | ||| | || ||||| | | || || ||||| | || Sbjct 9541 AAAAGTCCTGCAA-AAGCT-TCTGGATTTTGGGAATTCTTGTGGAGCCACCAACCAGGAC 9598 Query 517726 AATTTCATGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTT 517784 |||||||| || ||| || |||||||| || | ||| | | || ||||| |||| Sbjct 9599 TATTTCATGGACTCTG-GACTTATCCAGCTTGGCATCTTGCAGGGCCTTCTCAACTGGTT 9657 Query 517785 CAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGA 517844 | || | || || | || || || ||||| || || || || || || Sbjct 9658 CCAGTGTTCCCCTGAAAAGCTCGGAGTTGAGCTCTTCAAAGCGTGCCCTTGT--GATGGA 9715 Query 517845 CAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA 517902 | || || || || || || |||| ||| || | ||||| ||| || || ||| Sbjct 9716 GGTGTAGAAGTCGATGCCCTCAAACAGAGAGTCGATCTCAATGCTAGCCTGGGTGCTAGA 9775 Query 517903 AGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA 517962 || || | | || || | ||||| ||||| | || || | | ||| | || | Sbjct 9776 GGACAGGGTCCTCTTCGCTCTCTCACAAGCTGTGCGCAGCCTCCTCACTGCTCT--CTTA 9833 Query 517963 TT--GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAA 518018 || | | | || | || | |||||| || || || || ||| | ||| | || | Sbjct 9834 TTTTGGCTGATGTCCTTCTTGTGTTTTCTTTTAAATTCCTCTACAAA--ATGGTTGACCA 9891 Query 518019 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 518078 || || ||||| || || || || | | || | ||| | || ||| | || | | Sbjct 9892 TCCGGTTGTCAAAGTCCTCCCCGCCAAGGTGTGTGTCTCCCGCGGTGGCTTTCACCTCAA 9951 Query 518079 AAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAA 518138 | | || || || | | || | | || ||| ||| || ||||| | |||||| | Sbjct 9952 AGATACCGTCCTCGATGGTCAGGATGGACACGTCAAAGGTGCCTCCACCAAGATCAAAGA 10011 Query 518139 TAAGTACATT-CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 | || ||||| | | | | | || ||| || || || || |||| || || || Sbjct 10012 TGAGCACATTGCGCTCCCCTCTTTTACCTTTG-TCCAGGCCGTAAGCAATGGCTGCTGCT 10070 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 || || || || || || |||| |||||| || |||| || || || || || ||| Sbjct 10071 GTGGGCTCGTTGATGATCCTCAGAACATTCAGTCCAGAGATCACCCCGGCGTCCTTGGTG 10130 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCT 518317 ||||| || || || ||||| ||||| || ||||| || || || |||| | |||| | Sbjct 10131 GCTTGCCTCTGGGAGTCGTTGAAATAAGCGGGAACTGTGATGACCGCATTTGACACTTTT 10190 Query 518318 TTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 518377 | || | || || || | | ||||||||| || | ||| || || |||| Sbjct 10191 TGTCCCAGGTAGGCCTCAGCGATCTCCTTCATTTTAACTAGGACCATGGAGGAGATTTCC 10250 Query 518378 TCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 518437 |||||| || | ||| | || || || || | | | || || | | Sbjct 10251 TCTGGGTAAAAGGCCTTAGTCTCCCCTTTGTACTCAACCTGGACTTTGGGCTTTCCATTA 10310 Query 518438 ACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAA 518497 || | || || || ||||||||| |||||| || || || ||| | ||| ||||| Sbjct 10311 TCACTGATCACCTTGAATGGCCAGAGTTTCATGTCGGACTGGACAATGGAGTCGTTAAAC 10370 Query 518498 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGA 518557 | ||| ||||| | ||||| || ||||| || || ||||| ||||| || ||| | || Sbjct 10371 TTTCTCCCAATGAGACGTTTAGCGTCAAAGATTGTGTTGGTGGGATTCATGGCAACCTGG 10430 Query 518558 TATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTT 518617 | ||||| ||||||||||| || ||||| || || || | ||||| ||||| Sbjct 10431 TTCTTGGCAGCATCTCCAATGAGCCTCTCTGTGTCAGTGAAGGCCACATAGCTGGGAGTG 10490 Query 518618 GTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACA 518677 || | || || || || || || || || || ||||| |||| || | ||||| ||| Sbjct 10491 GTTCTGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAAACACCGACA 10550 Query 518678 CAACTAAAAGTTGTTCCTAAATCAATACCAATAG 518711 ||| | | || || || | |||||| ||||||| Sbjct 10551 CAAGAATAGGTGGTGCCCAGATCAATGCCAATAG 10584 >seq5514 Length=41840 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || |||||||| || | ||||||||||||||||||||| || || | | ||| Sbjct 38165 TTTTTGTCCAGACCATAAGCGATAGCAGCAGCAGTTGGTTCATTGATGATACGAAGGACA 38224 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| ||| | ||||||||||| ||||| || | || || || || || || Sbjct 38225 TTCAGCCCAGAAATGGTCCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 38284 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 ||||| ||||| | || |||| ||||| Sbjct 38285 GCAGGCACAGTCACTACAGCATTTGTTAC 38313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779084989230472