Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq12683 246 4e-60 seq5514 208 1e-48 seq9505 172 7e-38 seq33041 141 1e-28 >seq12683 Length=55699 Score = 246 bits (272), Expect = 4e-60 Identities = 1018/1585 (64%), Gaps = 22/1585 (1%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 || || ||| | || ||||| || | || || |||||| || || || ||||| | | Sbjct 9012 TCGTCCTCAGCCTTGTACTTATCAGAGTCCTGTACCATCCGCTCTATTTCCTCTTT-GCT 9070 Query 6629 AAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 || | ||||| ||||| || || || || || | ||| || | | || || | Sbjct 9071 AAGGCGGCCCTTGTCATTGGTGATGGTGATTTTGTTTTCTTTGCCGGTGCTTTTGTCGAC 9130 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || ||||||| ||| || || ||||| | ||||| |||| | | |||||| Sbjct 9131 GGCGGACACATTCAGAATGCCGTTGGCATCGATGTCGAAAGTTACCTCCACCTGTGGT-- 9188 Query 6748 ACCCCTCGGTGCGGCTGGA---ATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATC 6804 || |||||| | | ||||| ||||| || | ||||| | || || | |||| || Sbjct 9189 ACACCTCGGGGAG-CTGGAGGGATACCTGTGAGCTCAAACTTGCCCAGGAGGTTGTTGTC 9247 Query 6805 CGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTG 6864 | | | | | | ||||| || || || | ||| ||| | || || ||||| Sbjct 9248 CTTGGTCATGGCTCTCTCACCCTCGTACACCTGAATCAGCACACCTGGCTGGTTATCCGA 9307 Query 6865 TGCCGTTGAGAAGATTTGT-TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCG 6923 || |||||| | || ||| | || | || || || || || | || | | Sbjct 9308 GTATGTGGAGAAGGTCTGGGTCTGT-TTGGTGGGGATGGTGGTGTTGCGTTTGATTAGAG 9366 Query 6924 GGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTA 6983 | ||||||| ||||| ||| || | || |||||||| || | |||||||| || | Sbjct 9367 GCGTCATAACTCCACCTGCAGTCTCAATGCCCAGAGACAGGGGAGCCACGTCCAGCAGCA 9426 Query 6984 ACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCC 7043 ||| ||||| || ||| |||||| | | ||| || || ||||| | || | Sbjct 9427 GCAGATCTTGGACGTTCTCGGAAGTGTCACCCATGAGGATAGCAGCCTGGACAGCAGCAC 9486 Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAAT 7103 |||| || || || ||||| ||||| || | || ||||| || | ||||||||| | | Sbjct 9487 CGTAGGCCACGGCTTCATCTGGGTTGATGCTCTTGTTCAGGTCCCTGCCGTTAAAAAAGT 9546 Query 7104 CCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCAT 7163 || || | | || ||||| || |||| ||| || ||||| |||| || ||||||| Sbjct 9547 CCTGCAAAAGCTTCTGGATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACTATTTCAT 9606 Query 7164 TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATT 7223 ||| | || ||||| | ||| | ||| | || | || || || ||||||| | Sbjct 9607 GGACTCTGGACTTATCCAGCTTGGCATCTTGCAGGGCCTTCTCAACTGGTTCCAGTGTTC 9666 Query 7224 TACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAAT 7283 | ||| | || || || ||||| ||||| | || ||||| || ||||| | Sbjct 9667 CCCTGAAAAGCTCGGAGTTGAGCTCTTCAAAGCGTGCCCTTGTGATGGAGGTGTAGAAGT 9726 Query 7284 CAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTC 7343 | | ||| || | | || || || |||||| | | || | | || || | || | Sbjct 9727 CGATGCCCTCAAACAGAGAGTCGATCTCAATGCTAGCCTGGGTGCTAGAGGACAGGGTCC 9786 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403 ||| || | |||||| || || || | | | | || | | || | || | Sbjct 9787 TCTTCGCTCTCTCACAAGCTGTGCGCAGCCTCCTCACTGCTCTCTTATTTTGGCTGATGT 9846 Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTC-AGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462 | ||||| ||||| | |||||| || || | | || || || | | || || Sbjct 9847 CCTTCTTGTGTTTTCTTTTAAATTCCTCTACAAAATGGTTGACC-ATCCGGTTGTCAAAG 9905 Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || || || || | |||||| || |||||||| ||||| || ||||||||||| | || Sbjct 9906 TCCTCCCCGCCAAGGTGTGTGTCTCCCGCGGTGGCTTTCACCTCAAAGATACCGTCCTCG 9965 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | | || || ||||| || || ||||| || ||||| ||||| || || Sbjct 9966 ATGGTCAGGATGGACACGTCAAAGGTGCCTCCACCAAGATCAAAGATGAGCACATTGCGC 10025 Query 7583 TCGTCGTCTTTGTTC-TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 || | ||||| | || || || ||||| || || || || || || || || || || Sbjct 10026 TC-CCCTCTTTTACCTTTGTCCAGGCCGTAAGCAATGGCTGCTGCTGTGGGCTCGTTGAT 10084 Query 7642 AATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701 || | ||| ||||| |||| || | || || || || ||||| | || || Sbjct 10085 GATCCTCAGAACATTCAGTCCAGAGATCACCCCGGCGTCCTTGGTGGCTTGCCTCTGGGA 10144 Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGA 7761 ||||| || || || || || || | |||||| | | ||||| | || || || | Sbjct 10145 GTCGTTGAAATAAGCGGGAACTGTGATGACCGCATTTGACACTTTTTGTCCCAGGTAGGC 10204 Query 7762 TTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTG 7821 || ||||| || |||||||| || ||||| || || || || || | ||| Sbjct 10205 CTCAGCGATCTCCTTCATTTTAACTAGGACCATGGAGGAGATTTCCTCTGGGTAAAAGGC 10264 Query 7822 TTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAAC 7881 || || || || || | ||||| | | |||| || || || | | ||| || Sbjct 10265 CTTAGTCTCCCCTTTGTACTCAACCTGGACTTTGGGCTT-TC--CATTATCACTGATCAC 10321 Query 7882 CTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGAT 7941 ||| | | ||| |||||| ||| ||||| ||| ||||||||| || || Sbjct 10322 CTTGAATGGCCAGAGTTTCATGTCGGACTGGACAATGGAGTCGTTAAACTTTCTCCCAAT 10381 Query 7942 AAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGC 8001 ||||| || || ||||| | |||||| |||| |||||||| |||||||| || || Sbjct 10382 GAGACGTTTAGCGTCAAAGATTGTGTTGGTGGGATTCATGGCAACCTGGTTCTTGGCAGC 10441 Query 8002 GTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGAT 8060 || || || || | || | | || || || || || || | |||| || |||| | Sbjct 10442 ATCTCCAATGAGCC--TC-TCTGTGTCAGTGAAGGCCACATA-GCTGGGAGTGGTTCTGT 10497 Query 8061 TCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAAT 8120 | || |||||||| || || || || || | | | || | || ||||| || |||| Sbjct 10498 TGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAAACACCGACACAAGAAT 10557 Query 8121 ACGTTGTTCCTAAATCAATACCGAT 8145 | || || || | |||||| || || Sbjct 10558 AGGTGGTGCCCAGATCAATGCCAAT 10582 >seq5514 Length=41840 Score = 208 bits (230), Expect = 1e-48 Identities = 373/542 (69%), Gaps = 6/542 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || |||||||||||||| | ||||| || ||||| || || ||| Sbjct 37423 GCACCATAGGCCACTGCTTCATCGGGGTTAATGCTCTTATTGAGGTCTTTCCCATTGAAA 37482 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | | | || || || || || || || || || || ||||| || || Sbjct 37483 AAGTCCTGCAGGAGCTTCTGGATCTTGGGAATACGAGTGGAACCTCCCACCAAGACAATG 37542 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || || | || | || || ||||| | ||| || || | || || ||||| |||| Sbjct 37543 TCGTTGATTTGAGCCTTGTCCATCTTGGCGTCACGGAGCGACTTCTCCACAGGCTCCAGG 37602 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | ||||| ||||| ||| |||||||| || || | || || || || ||| Sbjct 37603 GTTCCTCGGAATAAGTCTGCGTTCAGCTCCTCAAAGCGGGCCCTTGTGATTGAGGTGTAG 37662 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||| | || ||||| | ||||| ||||| ||| | | || | | ||||| || Sbjct 37663 AAATCGATTCCCTCGTACAGAGAATCGATTTCGATGCTGGCCTGGGTGCTGGAAGACAAA 37722 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || | |||||| || || || | |||||| | || | | ||| || Sbjct 37723 GTGCGCTTCGCCCTCTCACAAGCGGTGCGCAGACGACGGACCGCTCTCTTGTTGTCGCTG 37782 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456 ||||| ||||| | || || || |||||| | ||||| || || | | | | | Sbjct 37783 ATATCCTTCTTGTACTTGCGCTTGAACTCTGCGATGAAGTGGTTGACCATGCGGTT---A 37839 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||| |||||||||||||| || || || || | ||||| |||||||| || Sbjct 37840 TCGAAGTCTTCTCCACCCAAGTGTGTGTCGCCTGCTGTGGACTTGACCTCAAAGATGCCG 37899 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | || | || || |||||||| ||||| ||||||||||| ||||| ||| Sbjct 37900 TCTTCAATAGTCAAGATGGAGACGTCAAACGTGCCACCGCCCAGGTCAAAGATGAGGACG 37959 Query 7577 TT 7578 || Sbjct 37960 TT 37961 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACA 7653 || || || ||||| || |||||||| || || ||||||||||| || ||||||| |||| Sbjct 38165 TTTTTGTCCAGACCATAAGCGATAGCAGCAGCAGTTGGTTCATTGATGATACGAAGGACA 38224 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||||| |||| ||| || | |||||||| || || || || || || || || ||||| Sbjct 38225 -TTCAGCCCAGAAATGGTCCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTA 38283 Query 7714 GGCCGGGACCGTTACGACCGC 7734 ||| || || || || || || Sbjct 38284 GGCAGGCACAGTCACTACAGC 38304 >seq9505 Length=2747 Score = 172 bits (190), Expect = 7e-38 Identities = 333/486 (69%), Gaps = 8/486 (2%) Strand=Plus/Plus Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 || || |||||||||||||| || |||||||| || || || ||||| | || |||| Sbjct 1955 TTGTCCAGACCGTACGCGATGGCGGCCGCCGTCGGCTCGTTGATAATCCTCAGGACGTTC 2014 Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717 || || || || |||| |||||||| || ||||| || || ||||| ||||| ||| Sbjct 2015 AGTCCCGCGATGACGCCCGCGTCTTTCGTGGCCTGTCGCTGGGAGTCGTTGAAGTACGCC 2074 Query 7718 GGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTC 7777 |||||||| |||||||||| | || | | ||||| || | || ||||| || ||| Sbjct 2075 GGGACCGTGACGACCGCGTTGGACACCTGGTGGCCGAGGTAGGCCTCGGCGATCTCCTTC 2134 Query 7778 ATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGT-TTCACCGTT 7836 || || || ||||| || || ||||| || | | | | |||| || || || || Sbjct 2135 ATCTTCAGCAGGACCATGGAGGAGATCTCCTC-GGGGTAGAAGGTTTTGTCCTCCCCTTT 2193 Query 7837 AAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATC 7896 | || || | || |||| || | || | || | ||||| | | ||| | Sbjct 2194 GTATTCCACCTGGATTTTGGGCTTCCCTCCATCTCC---AACCACCTTGAAGGGCCAGTG 2250 Query 7897 TTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATC 7956 ||||| || | || ||| | | || ||||||||||| || || | ||| ||||| Sbjct 2251 CTTCATGTCAGCCTGCACCACTGGATCATCCAACTTTCTTCCAATCAGTCTCTTGGCATC 2310 Query 7957 AAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACG 8016 ||| || ||||| ||||||||| || |||||||| |||||||||||||| || | Sbjct 2311 AAACACGGTGTTGCTGGGGTTCAGAGCCACCTGGTTCTTGGCCGCGTCCCCGATCAGCC- 2369 Query 8017 TTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGC 8076 || | | || || ||||| || || ||||| || | || || |||||||| || Sbjct 2370 -TC-TCGGTGTCGGTGAACGCCACATAGCTGGGGGTGGTCCTGTTGCCCTGGTCGTTGGC 2427 Query 8077 AATAAT 8082 || || Sbjct 2428 GATGAT 2433 >seq33041 Length=13230 Score = 141 bits (156), Expect = 1e-28 Identities = 357/541 (66%), Gaps = 4/541 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || |||||||| ||||| || | || || || || || ||||| Sbjct 2093 GCACCATAGGCCACAGCCTCATCAGGGTTGATGCTCTTGTTGAGGTCACGGCCATTAAAC 2152 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || | |||||| || ||||| ||||| || || || |||| || || Sbjct 2153 AAGTCCTGCAGCAGCTTTTGAATCTTGGGGATACGTGTGGAGCCCCCCACCAGGACAATA 2212 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | ||||| ||||| | || | || | || || ||||| || | Sbjct 2213 TCATGGATCTGACTCTTATCCATCTTGGCATCCCTCAGGGCCTTCTCCACAGGCTCGAGG 2272 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | ||| |||| ||| | || || |||||||| || | ||| ||||| || ||| Sbjct 2273 GTTCCACGAAACAGGTCTGCATTGAGCTCTTCAAAACGAGCCCTGGTGATGGAAGTGTAG 2332 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG--TGCCGTCGAAGATA 7337 ||||| || || ||||| | |||||||| ||||| | | || ||| | | ||| Sbjct 2333 AAATCTACCCCTTCGTAGAGTGAATCAATCTCAATACTGGCCTGGGTGCTGCTGGAGAGG 2392 Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGG 7397 || ||||| || || || || || || || | |||||| | || || ||| | Sbjct 2393 --GTGCGCTTGGCACGTTCGCAGGCTGTGCGCAGACGACGGACAGCTCGTTTGTTGTTGT 2450 Query 7398 AAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAAT 7457 || || || || || || || ||||| || |||||| || | | || Sbjct 2451 TGATTTCCTTTTTGAACTTGCGCTTGAACTCAGCAATGAAGTGGTTAACCATGCGGTTAT 2510 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 | |||||||||||||||||||| || || || || || | ||||| |||||||| || Sbjct 2511 CAAAATCTTCACCACCCAAGTGAGTGTCACCAGCTGTGGACTTGACCTCAAAGATGCCAT 2570 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 | || || | | | || |||||||| |||||||| || |||||||| || || || | Sbjct 2571 CCTCGATAGTCAGGATTGACACATCAAAAGTACCACCTCCAAGGTCAAAGATAAGAACAT 2630 Query 7578 T 7578 | Sbjct 2631 T 2631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634854834130080