Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq15996 165 1e-35 seq95 84.2 3e-11 >seq15996 Length=6831 Score = 165 bits (182), Expect = 1e-35 Identities = 660/1023 (65%), Gaps = 27/1023 (3%) Strand=Plus/Plus Query 112071 GAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAG 112130 |||||| | || | | || || |||| ||| | ||||| || || || ||||||||| Sbjct 1471 GAGGAGCAGAGGGCCAGAGACCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGAAG 1530 Query 112131 AGAGTTGAGGAGAGTGGCAAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTC 112187 ||||| |||||| | | |||||||| | ||||| || || ||||| || Sbjct 1531 AGAGT---GGAGAGCAACCAAGACTGGTCTCTGATGTGTCCGAACGAGTGCCCCGGGCTG 1587 Query 112188 TCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG 112246 ||| ||| | ||| |||||||| || || ||||| | ||| ||| | || | | Sbjct 1588 GACGAGTGCTGGGGG-GAGGAGTTCGAGAAGCTGTACACCACGTATGAGAAGGAGGGGAG 1646 Query 112247 GG-CGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCG 112305 || | | ||| |||| ||| | |||||| | || ||| || |||| || || | Sbjct 1647 GGTCAAGCGCGT-GGTGAAGGCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACGG 1705 Query 112306 AGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 112365 | || ||||| || || ||||| |||||||||||||| ||| ||||| || || ||| Sbjct 1706 AAACCGGTACGCCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGA 1765 Query 112366 ATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 112425 || |||| ||||| || ||||||||| |||||||| | || | || | | | Sbjct 1766 ATCTGGGCACCATCAAAAGCAGCAACCTCTGCACAGAAATAGTTGAGTACACCAGCGACG 1825 Query 112426 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 112485 ||||| || |||||||| || || || ||||| ||| || ||| || || ||| Sbjct 1826 ATGAGGTAGCGGTGTGTAATCTGGCCTCCATCGCGCTCAACATGTACGTCACCCCTGAG- 1884 Query 112486 CAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAA 112545 ||| ||||| | | ||||||| || || ||| || |||||| | | Sbjct 1885 --CGGACTTTTGACTTTAAAAAACTAGCGTTTGTGACCAAAGTCATCGTCAAAAACTTGA 1942 Query 112546 ACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGA 112602 ||| |||| || | || | ||||| || ||| || || || || | | Sbjct 1943 ACAAGATTATCGAAATCAACTACTACCCAGTGCCTGA---AGCGGAGAAGTCCAACAAGC 1999 Query 112603 GACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCC 112662 | ||| | || || || |||| || || ||| | || || | ||||| || ||| Sbjct 2000 GCCACAGGCCGATCGGAATCGGCGTGCAGGGTTTGGCAGACGCCTTCATCCTCATGCGCT 2059 Query 112663 ACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATC 112722 || | || || | ||| || || | || | || |||||||| || || Sbjct 2060 ACCCGTTCGAAAGCCCCGAGGCTCAGCTGCTGAACATTCAAATCTTTGAGACCATCTACT 2119 Query 112723 ACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTG 112782 ||||||| || |||||||| | ||| |||| | | || || || || || | | Sbjct 2120 ACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCTGAGCTCGGCCCCTACGAGACGTACG 2179 Query 112783 AGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA 112840 | || ||||| | ||| |||||| | || || | || ||||||| || || || | Sbjct 2180 AAGGCTCTCCGG--TCAGCAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACGCCCA 2236 Query 112841 GCTTCACTAC--GACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 112898 | | || | |||||| | || || ||||| ||| || | || | | ||| Sbjct 2237 CCGAC-CTGCTGGACTGGAAGGCCCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAAC 2295 Query 112899 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 112958 || || || |||| || ||||| || ||||||||||| || ||| |||| || || || Sbjct 2296 AGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAG 2355 Query 112959 TGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTG 113018 | | | ||| ||||||| | |||||||| | || ||| ||||||||||| | Sbjct 2356 TCCATCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTGCTCTCGGGAGAGTTTCAG 2415 Query 113019 ATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG 113078 || || || || || | | ||||| | |||| || || ||| | |||| ||| Sbjct 2416 ATAGTGAATCCTCACCTGCTCAAAGACCTGACGGAGAGGGGACTGTGGAGCGAGGAGATG 2475 Query 113079 AAG 113081 ||| Sbjct 2476 AAG 2478 >seq95 Length=91801 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 |||||| | | || ||||| || ||||| || |||||||| || || ||| || Sbjct 11966 GAGCGAATTGTGGCTTTTGCAGCAGTGGAGGGAATATTCTTCTCCGGCTCATTCGCTGCC 11907 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 |||||||||||||||||| |||| || ||||| || || || |||||||||||| || Sbjct 11906 ATTTATTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGAT 11848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620470732088640