Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 165 1e-35
seq95 84.2 3e-11
>seq15996
Length=6831
Score = 165 bits (182), Expect = 1e-35
Identities = 660/1023 (65%), Gaps = 27/1023 (3%)
Strand=Plus/Plus
Query 112071 GAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAG 112130
|||||| | || | | || || |||| ||| | ||||| || || || |||||||||
Sbjct 1471 GAGGAGCAGAGGGCCAGAGACCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGAAG 1530
Query 112131 AGAGTTGAGGAGAGTGGCAAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTC 112187
||||| |||||| | | |||||||| | ||||| || || ||||| ||
Sbjct 1531 AGAGT---GGAGAGCAACCAAGACTGGTCTCTGATGTGTCCGAACGAGTGCCCCGGGCTG 1587
Query 112188 TCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG 112246
||| ||| | ||| |||||||| || || ||||| | ||| ||| | || | |
Sbjct 1588 GACGAGTGCTGGGGG-GAGGAGTTCGAGAAGCTGTACACCACGTATGAGAAGGAGGGGAG 1646
Query 112247 GG-CGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCG 112305
|| | | ||| |||| ||| | |||||| | || ||| || |||| || || |
Sbjct 1647 GGTCAAGCGCGT-GGTGAAGGCTCAGCAGGTGTGGCACGCCATTATCGAGTCCCAGACGG 1705
Query 112306 AGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 112365
| || ||||| || || ||||| |||||||||||||| ||| ||||| || || |||
Sbjct 1706 AAACCGGTACGCCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGA 1765
Query 112366 ATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 112425
|| |||| ||||| || ||||||||| |||||||| | || | || | | |
Sbjct 1766 ATCTGGGCACCATCAAAAGCAGCAACCTCTGCACAGAAATAGTTGAGTACACCAGCGACG 1825
Query 112426 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 112485
||||| || |||||||| || || || ||||| ||| || ||| || || |||
Sbjct 1826 ATGAGGTAGCGGTGTGTAATCTGGCCTCCATCGCGCTCAACATGTACGTCACCCCTGAG- 1884
Query 112486 CAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAA 112545
||| ||||| | | ||||||| || || ||| || |||||| | |
Sbjct 1885 --CGGACTTTTGACTTTAAAAAACTAGCGTTTGTGACCAAAGTCATCGTCAAAAACTTGA 1942
Query 112546 ACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGA 112602
||| |||| || | || | ||||| || ||| || || || || | |
Sbjct 1943 ACAAGATTATCGAAATCAACTACTACCCAGTGCCTGA---AGCGGAGAAGTCCAACAAGC 1999
Query 112603 GACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCC 112662
| ||| | || || || |||| || || ||| | || || | ||||| || |||
Sbjct 2000 GCCACAGGCCGATCGGAATCGGCGTGCAGGGTTTGGCAGACGCCTTCATCCTCATGCGCT 2059
Query 112663 ACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATC 112722
|| | || || | ||| || || | || | || |||||||| || ||
Sbjct 2060 ACCCGTTCGAAAGCCCCGAGGCTCAGCTGCTGAACATTCAAATCTTTGAGACCATCTACT 2119
Query 112723 ACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTG 112782
||||||| || |||||||| | ||| |||| | | || || || || || | |
Sbjct 2120 ACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCTGAGCTCGGCCCCTACGAGACGTACG 2179
Query 112783 AGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA 112840
| || ||||| | ||| |||||| | || || | || ||||||| || || || |
Sbjct 2180 AAGGCTCTCCGG--TCAGCAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACGCCCA 2236
Query 112841 GCTTCACTAC--GACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 112898
| | || | |||||| | || || ||||| ||| || | || | | |||
Sbjct 2237 CCGAC-CTGCTGGACTGGAAGGCCCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAAC 2295
Query 112899 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 112958
|| || || |||| || ||||| || ||||||||||| || ||| |||| || || ||
Sbjct 2296 AGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAG 2355
Query 112959 TGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTG 113018
| | | ||| ||||||| | |||||||| | || ||| ||||||||||| |
Sbjct 2356 TCCATCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTGCTCTCGGGAGAGTTTCAG 2415
Query 113019 ATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATG 113078
|| || || || || | | ||||| | |||| || || ||| | |||| |||
Sbjct 2416 ATAGTGAATCCTCACCTGCTCAAAGACCTGACGGAGAGGGGACTGTGGAGCGAGGAGATG 2475
Query 113079 AAG 113081
|||
Sbjct 2476 AAG 2478
>seq95
Length=91801
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239
|||||| | | || ||||| || ||||| || |||||||| || || ||| ||
Sbjct 11966 GAGCGAATTGTGGCTTTTGCAGCAGTGGAGGGAATATTCTTCTCCGGCTCATTCGCTGCC 11907
Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298
|||||||||||||||||| |||| || ||||| || || || |||||||||||| ||
Sbjct 11906 ATTTATTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGAT 11848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620470732088640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |