Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq15996 102 1e-16
seq25531 100 3e-16
seq7875 84.2 3e-11
seq1133 84.2 3e-11
>seq15996
Length=6831
Score = 102 bits (112), Expect = 1e-16
Identities = 264/392 (67%), Gaps = 8/392 (2%)
Strand=Plus/Minus
Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329
|||| || || ||| || || || || ||||| ||||| | ||| || | | ||
Sbjct 1876 TGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGG 1817
Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389
|||| || | ||||| || || | |||| || || ||| |||| |||| ||| |
Sbjct 1816 TGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGT 1757
Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449
| || |||||| || || || || |||||||| || ||||| ||||||||||| |
Sbjct 1756 TGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGG 1697
Query 110450 ACTTGAGAATGGCCTTCCATACAT-CGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCC 110508
||| || |||||| | ||| || | | | | | || || || | || |||
Sbjct 1696 ACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGC-TTGACCCTCCCCTCC 1638
Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCTT 110567
| ||| ||| ||||||||| | ||| || |||| || | ||| || || |||
Sbjct 1637 TTCTCATACGTGGTGTACAGCTTCTCGAACTCCTCCCCCCAGCAC-TCGTCCAG-CCCGG 1580
Query 110568 CGC-CTTGTCGGGACAGAAGAGGGACCAAT-TTCCACCCTCCTCAACCCTCTTCATGAAC 110625
|| || || ||||| | || ||||| | || || ||| || ||||||||||||
Sbjct 1579 GGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCT-CTCCACTCTCTTCATGAAC 1521
Query 110626 AGGTCAGGAATCCACATCGCCGAGAAAAGGTC 110657
||||| || |||||||| || ||||||||||
Sbjct 1520 AGGTCGGGGATCCACATGGCGTAGAAAAGGTC 1489
>seq25531
Length=26544
Score = 100 bits (110), Expect = 3e-16
Identities = 78/93 (84%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811
||||||||| | |||||||| || | ||||||||||||| ||||| || ||||| ||
Sbjct 21135 GTAGATGTTGCTGGTGTAGGGCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTTGA 21194
Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844
||||||||||||||| |||| ||| ||||||||
Sbjct 21195 AGCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 21227
>seq7875
Length=8908
Score = 84.2 bits (92), Expect = 3e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
|||||||| |||||||||||||||||| |||||||||||||| ||||||||| ||| ||
Sbjct 4157 TAGCTCAGATGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCTGT 4099
>seq1133
Length=53824
Score = 84.2 bits (92), Expect = 3e-11
Identities = 51/54 (94%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 136722 CAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
|||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 27681 CAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 27734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588718234653600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |