Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq15996 102 1e-16 seq25531 100 3e-16 seq7875 84.2 3e-11 seq1133 84.2 3e-11 >seq15996 Length=6831 Score = 102 bits (112), Expect = 1e-16 Identities = 264/392 (67%), Gaps = 8/392 (2%) Strand=Plus/Minus Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329 |||| || || ||| || || || || ||||| ||||| | ||| || | | || Sbjct 1876 TGACGTACATGTTGAGCGCGATGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGG 1817 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389 |||| || | ||||| || || | |||| || || ||| |||| |||| ||| | Sbjct 1816 TGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGT 1757 Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449 | || |||||| || || || || |||||||| || ||||| ||||||||||| | Sbjct 1756 TGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGG 1697 Query 110450 ACTTGAGAATGGCCTTCCATACAT-CGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCC 110508 ||| || |||||| | ||| || | | | | | || || || | || ||| Sbjct 1696 ACTCGATAATGGCGTGCCACACCTGCTGAGCCTTCACCACGCGC-TTGACCCTCCCCTCC 1638 Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCTT 110567 | ||| ||| ||||||||| | ||| || |||| || | ||| || || ||| Sbjct 1637 TTCTCATACGTGGTGTACAGCTTCTCGAACTCCTCCCCCCAGCAC-TCGTCCAG-CCCGG 1580 Query 110568 CGC-CTTGTCGGGACAGAAGAGGGACCAAT-TTCCACCCTCCTCAACCCTCTTCATGAAC 110625 || || || ||||| | || ||||| | || || ||| || |||||||||||| Sbjct 1579 GGCACTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCT-CTCCACTCTCTTCATGAAC 1521 Query 110626 AGGTCAGGAATCCACATCGCCGAGAAAAGGTC 110657 ||||| || |||||||| || |||||||||| Sbjct 1520 AGGTCGGGGATCCACATGGCGTAGAAAAGGTC 1489 >seq25531 Length=26544 Score = 100 bits (110), Expect = 3e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | |||||||| || | ||||||||||||| ||||| || ||||| || Sbjct 21135 GTAGATGTTGCTGGTGTAGGGCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTTGA 21194 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTT 109844 ||||||||||||||| |||| ||| |||||||| Sbjct 21195 AGCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 21227 >seq7875 Length=8908 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 |||||||| |||||||||||||||||| |||||||||||||| ||||||||| ||| || Sbjct 4157 TAGCTCAGATGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCTGT 4099 >seq1133 Length=53824 Score = 84.2 bits (92), Expect = 3e-11 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 136722 CAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 |||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 27681 CAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 27734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588718234653600