Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq33041 122 7e-22 seq5514 109 4e-18 seq34114 86.0 5e-11 >seq33041 Length=13230 Score = 122 bits (134), Expect = 7e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || || || || || |||||||| || |||||||| || ||||||| Sbjct 2884 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCTCAGCGTCAAGCCACCAAAGATG 2825 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| || |||||||||||||| || || || |||||||| || |||||||| || Sbjct 2824 CTGGAACCATCGCTGGACTTAATGTGCTGCGCATCATCAATGAGCCCACTGCTGCAGCCA 2765 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 2764 TTGCTTATGGCCTGGACAAA 2745 >seq5514 Length=41840 Score = 109 bits (120), Expect = 4e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | ||||| || || || || |||||||| || || || || || ||||||| Sbjct 38306 ATGCTGTAGTGACTGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 38247 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| || ||||| |||||||| ||||||||||| ||||||||||| Sbjct 38246 CAGGGACCATTTCTGGGCTGAATGTCCTTCGTATCATCAATGAACCAACTGCTGCTGCTA 38187 Query 550518 TTGCATATGGACTTGATAAA 550537 | || ||||| || || ||| Sbjct 38186 TCGCTTATGGTCTGGACAAA 38167 >seq34114 Length=5522 Score = 86.0 bits (94), Expect = 5e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 ||| || ||||||||||||||||| || || || |||||||| || || ||||| ||||| Sbjct 5317 AGGGATCCCTCCTGCTCCTCGTGGTGTTCCCCAGATTGAAGTGACATTTGATATTGATGC 5258 Query 552566 CAATGGAATTTTGAATGTGACTGCT 552590 ||||||||| | ||||| ||||| Sbjct 5257 CAATGGAATCCTTAATGTCTCTGCT 5233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027444407535880