Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq27843 152 4e-32 seq11398 114 1e-20 >seq27843 Length=4971 Score = 152 bits (168), Expect = 4e-32 Identities = 138/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| || || || | |||||||| || || || || Sbjct 1803 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCAATATTGAAAGGC 1862 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 |||||||| ||||| || ||||| | |||||| ||||||||||| ||||| ||||| | | Sbjct 1863 ACCCCGAGGCCCATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACAC 1922 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 ||||| |||||||||| || |||||| || || ||||||||| || || |||| Sbjct 1923 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGTGGGGCATGTCT 1976 Score = 138 bits (152), Expect = 9e-28 Identities = 135/173 (78%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||| |||||||| || || || ||||||||||||||||| ||||| ||||||||||| Sbjct 2952 CATGTTTGTGTACTCGGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCCAGGTC 3011 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || || | | ||| || ||||||| ||||| | ||| |||||||| || Sbjct 3012 GCCTTCCTCTCGATCTGTGAACCCGAGGTTGTCCAGGAAGTCCCGGGACCCGTTGGCATC 3071 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322 ||||||||| ||||| ||| | ||||||||||||| ||||| || || |||| Sbjct 3072 CCAGATCTTCACCCCTTTCGCCGAGAGCTCTTTGGCATTTGTTGATCC-CTGA 3123 >seq11398 Length=8844 Score = 114 bits (126), Expect = 1e-20 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166 ||||||||||||||| | ||| ||||||| ||||||| || ||||| || |||||||| Sbjct 4345 CTCCCTGCTGAGGACGATGTTGATCCTGTTGTTCAGAGGCCTGTTCTTCTCTGGGATGGA 4404 Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||| ||||| || ||||| |||||||| |||||||||||| Sbjct 4405 AAACCATGTCTTCCTGCCCATGATCACCACATTCTGCTTGCCT 4447 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 112261 AGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACACG 112320 ||||| | || ||||| ||||| | ||| || ||||||| |||| ||| |||||||| Sbjct 5854 AGTCTAACGGGGTGCCAGGGCAGGTTTCCATTCATCCCGATACCCAGGTCGGGACACACC 5913 Query 112321 GCCACGATACCGTTCAGAATGAGGG 112345 ||||||||||||||||||| | ||| Sbjct 5914 GCCACGATACCGTTCAGAACGCGGG 5938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408443239294676