Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq27843 152 4e-32
seq11398 114 1e-20
>seq27843
Length=4971
Score = 152 bits (168), Expect = 4e-32
Identities = 138/174 (79%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| ||| || |||||||| || || || | |||||||| || || || ||
Sbjct 1803 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCAATATTGAAAGGC 1862
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|||||||| ||||| || ||||| | |||||| ||||||||||| ||||| ||||| | |
Sbjct 1863 ACCCCGAGGCCCATATCACCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCACAC 1922
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042
||||| |||||||||| || |||||| || || ||||||||| || || ||||
Sbjct 1923 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGTGGGGCATGTCT 1976
Score = 138 bits (152), Expect = 9e-28
Identities = 135/173 (78%), Gaps = 1/173 (1%)
Strand=Plus/Plus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||||| |||||||| || || || ||||||||||||||||| ||||| |||||||||||
Sbjct 2952 CATGTTTGTGTACTCGGCACCAAAGTGCCTCCACTGGAACCCATACACAGGTCCCAGGTC 3011
Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269
|| || || | | ||| || ||||||| ||||| | ||| |||||||| ||
Sbjct 3012 GCCTTCCTCTCGATCTGTGAACCCGAGGTTGTCCAGGAAGTCCCGGGACCCGTTGGCATC 3071
Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322
||||||||| ||||| ||| | ||||||||||||| ||||| || || ||||
Sbjct 3072 CCAGATCTTCACCCCTTTCGCCGAGAGCTCTTTGGCATTTGTTGATCC-CTGA 3123
>seq11398
Length=8844
Score = 114 bits (126), Expect = 1e-20
Identities = 87/103 (84%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166
||||||||||||||| | ||| ||||||| ||||||| || ||||| || ||||||||
Sbjct 4345 CTCCCTGCTGAGGACGATGTTGATCCTGTTGTTCAGAGGCCTGTTCTTCTCTGGGATGGA 4404
Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||| ||||| || ||||| |||||||| ||||||||||||
Sbjct 4405 AAACCATGTCTTCCTGCCCATGATCACCACATTCTGCTTGCCT 4447
Score = 82.4 bits (90), Expect = 6e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 112261 AGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACACG 112320
||||| | || ||||| ||||| | ||| || ||||||| |||| ||| ||||||||
Sbjct 5854 AGTCTAACGGGGTGCCAGGGCAGGTTTCCATTCATCCCGATACCCAGGTCGGGACACACC 5913
Query 112321 GCCACGATACCGTTCAGAATGAGGG 112345
||||||||||||||||||| | |||
Sbjct 5914 GCCACGATACCGTTCAGAACGCGGG 5938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408443239294676
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |