Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq15996 300 3e-76 seq25531 86.0 1e-11 >seq15996 Length=6831 Score = 300 bits (332), Expect = 3e-76 Identities = 938/1456 (64%), Gaps = 36/1456 (2%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || |||||||| ||| | |||| || ||| ||||| | Sbjct 2475 CATCTCCTCGCTCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTCACTAT 2416 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 || || ||||||||||||||||| | ||| | ||| ||| | | ||||||| Sbjct 2415 CTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGA 2356 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| ||| |||||||| || |||| |||||| || Sbjct 2355 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCT 2296 Query 221245 GTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACAGTGTCCTCC 221304 ||| | || ||| | ||| || |||| | |||||||| ||| Sbjct 2295 GTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGGCCTTCCAGTC-CAG-------- 2245 Query 221305 CAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACACCGGACT 221364 |||||| || |||||| Sbjct 2244 CAGGTCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACCGGAGA 2185 Query 221365 CCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGC 221424 || ||||||| ||||||||| ||| | ||||| | |||| | | |||||| Sbjct 2184 GCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGC 2125 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484 |||| |||||||||||||||||| |||| || || |||||||| ||| Sbjct 2124 GGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGCCTCGGGGCTTTCGAA 2065 Query 221485 GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544 || |||| | ||| |||| |||| ||||| || ||||| ||||| ||||| Sbjct 2064 CGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGCACGCCGATTCCGATCGGCCT 2005 Query 221545 GTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATT 221604 ||| | | ||||||| ||||||| ||||| || || |||||| ||||| | || Sbjct 2004 GTGGCGCTTGTTGGACTTCTCCGCTTCAGGCACTGGGTAGTAGTTGATTTCGATAATCTT 1945 Query 221605 GTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAA 221664 ||| | ||| ||||||||| ||| | || || || || ||| Sbjct 1944 GTTCAAGTTTTTGACGATGACTTTGGTCACAAACGCTAGTTT-------TTTAAAGTCAA 1892 Query 221665 CTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACA 221724 |||| || |||||| | | | | || || || | | |||||| ||||| Sbjct 1891 AAGTCCGC--TC----AGGGGTGACGTACATG--TTGAGCGCGATGGAGGCCAGATTACA 1840 Query 221725 CACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTT 221784 ||| || ||||| || | | |||| |||| | || ||||| ||||||||||||| || Sbjct 1839 CACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTGCAGAGGTTGCTGCTTTT 1780 Query 221785 GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAA 221844 |||||| ||||| | | || || ||| | ||| ||||| ||||| ||||| | Sbjct 1779 GATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTA 1720 Query 221845 GGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCA 221903 || || || ||| ||| | | | | ||| || ||| | | ||| || ||| Sbjct 1719 CGGCGTACCGGTTTCCGTCTGGGACTCGATAATGGCGTGCCACACCTG-CTGAGCCTTCA 1661 Query 221904 CCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTT 221963 || | |||||| ||||| ||| |||||| ||| || ||| | || |||| | Sbjct 1660 CCACGCGCTTGACCCTCCCCTC---CTTCTCATACGTGGTGTACAGCTTCTCGAACTCCT 1604 Query 221964 CACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGT 222023 | || | ||||||||| || || ||| | |||||||||||| ||||| | || Sbjct 1603 CCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGAGACCAGTCTTGGT 1544 Query 222024 TGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGG 222083 || | || |||| |||||| ||||| |||||||||| || | || || ||||||| Sbjct 1543 TGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCTCTGG 1484 Query 222084 TCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGT 222143 || |||||||||| ||| |||| ||| |||| |||| || ||||| | ||| || Sbjct 1483 CCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACGTCGAAGT 1424 Query 222144 GCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCA 222203 |||| |||||||| || | ||| | || ||||| | ||||||||| ||||| || || Sbjct 1423 GCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCTCCCTGGTCGACGT 1364 Query 222204 TCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGG 222263 | | || |||| ||| | || | || || || |||||||| ||||||| Sbjct 1363 AACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGG 1304 Query 222264 TGCCCTTAATGTACGCACCGCCGGCCCTC--AGGTTACTGGCAGACATGCCGATACCACC 222321 |||| ||||| || || ||| | || | | ||| | | || |||||| || || Sbjct 1303 TGCCGGCGATGTA-GCTCC-CCGTCGATCGGATGCAGCTGACCGCCACGCCGATTCCCCC 1246 Query 222322 GGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTC 222381 ||| || ||||| | ||| || ||| || ||||| ||||| || || ||| Sbjct 1245 GGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTC 1186 Query 222382 CTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAA 222441 ||||| | | ||||| || || |||| ||| | || ||| | ||||| || Sbjct 1185 GTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCCGCGTTGAA 1126 Query 222442 CAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGAC 222501 |||||||| |||||| || || | | |||| ||| | ||||||||| | | | Sbjct 1125 GAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTACGTCTCAATGGC 1066 Query 222502 TCTGGCGATGTTGTCC 222517 | ||| || ||||| Sbjct 1065 T---GCGCTGATGTCC 1053 >seq25531 Length=26544 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || || || ||||||||||||||||| | ||| | ||| ||| | || || ||| Sbjct 21103 ACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCAATG 21162 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||| ||||||||||||||||| || || || ||||||||||| |||| |||||| Sbjct 21163 GACTCATTGTTGCCCAGGATCTGGGCAGTTGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 21222 Query 221243 CTGTT 221247 ||||| Sbjct 21223 CTGTT 21227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928438291073280