Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq12683 163 2e-34 seq33041 105 4e-17 seq5514 98.7 6e-15 seq34114 86.0 4e-11 seq4872 86.0 4e-11 >seq12683 Length=55699 Score = 163 bits (180), Expect = 2e-34 Identities = 366/545 (67%), Gaps = 6/545 (1%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||| |||||| | || || || || |||||| | ||||| || |||| ||||| Sbjct 10582 ATTGGCATTGATCTGGGCACCACCTATTCTTGTGTCGGTGTTTTCCAGCATGGCAAAGTG 10523 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || || ||||| ||||| || || ||||| || || ||||| | || ||||| Sbjct 10522 GAGATCATCGCCAACGACCAGGGCAACAGAACCACTCCCAGCTATGTGGCCTTCACTGAC 10463 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || || |||||||||||||| || | || | ||| ||||| || || Sbjct 10462 ACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAGGTTGCCATGAATCCCACCAACACA 10403 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 || ||||| |||||| | | ||||| | || ||| | || ||| |||||| || || Sbjct 10402 ATCTTTGACGCTAAACGTCTCATTGGGAGAAAGTTTAACGACTCCATTGTCCAGTCCGAC 10343 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATATAGAAGCAA 474629 ||| | ||||| || |||||||| | || | ||| || || | | || | Sbjct 10342 ATGAAACTCTGGCCATTCAAGGTGATCAGTGATAATGGAAAGCCCAAAGTCCAGGTTGAG 10283 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 |||| ||| || ||||| |||| || || |||| || || ||||| ||| | Sbjct 10282 TACA--AAGGGGAGACTAAGGCCTTTTACCCAGAGGAAATCTCCTCCATGGTCCTAGTTA 10225 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 ||||||| | | ||| ||| | || || |||||| |||| | |||| || || || Sbjct 10224 AAATGAAGGAGATCGCTGAG-GCCTACCTGGGACAAAAAGTGTCAAATGCGGTCATCACA 10166 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 ||||| || ||||| || || || || | ||||| || || || || || || | Sbjct 10165 GTTCCCGCTTATTTCAACGACTCCCAGAGGCAAGCCACCAAGGACGCCGGGGTGATCTCT 10106 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || || |||||| | | || || || || || |||||||| || ||||||| || || Sbjct 10105 GGACTGAATGTTCTGAGGATCATCAACGAGCCCACAGCAGCAGCCATTGCTTACGGCCTG 10046 Query 474869 GATAA 474873 || || Sbjct 10045 GACAA 10041 Score = 113 bits (124), Expect = 3e-19 Identities = 519/812 (64%), Gaps = 16/812 (2%) Strand=Plus/Minus Query 475363 AGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCA 475420 ||| || || ||||| |||| ||||| || || || ||||| || | | || | || Sbjct 9941 AGCCACCGCGGGAGACACACACCTTGGCGGGGAGGACTTTGACAACCGGATGGTCAACCA 9882 Query 475421 TGGTGTGTTGAAGATTTCAAGAGGAAAAATAA--AGTTGATCTTTCAACATCTGCTAAAG 475478 | | ||| || || || || || ||| | || || ||| ||| || | | || Sbjct 9881 T--TTTGTAGAGGAATTTAAAAGAAAACACAAGAAGGACATCAGCCAAAATAAG--AGAG 9826 Query 475479 CATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTC 475538 || | || | || | || |||||||| | || ||| | | || || ||| || | Sbjct 9825 CAGTGAGGAGGCTGCGCACAGCTTGTGAGAGAGCGAAGAGGACCCTGTCCTCTAGCACCC 9766 Query 475539 AAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACA 475597 | ||| |||| | || ||||| ||||| || || || || || ||| || ||| Sbjct 9765 AGGCTAGCATTGAGATCGACTCTCTGTTTGAGGGCATCGACTTCTACACCTCC-ATCACA 9707 Query 475598 AGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAA 475657 ||||| |||||||| | || || || || || |||| | ||||| ||||| Sbjct 9706 AGGGCACGCTTTGAAGAGCTCAACTCCGAGCTTTTCAGGGGAACACTGGAACCAGTTGAG 9647 Query 475658 CAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGA 475717 | | || |||| | || || || || || |||||||||||| || || || || Sbjct 9646 AAGGCCCTGCAAGATGCCAAGCTGGATAAGTCCAGAGTCCATGAAATAGTCCTGGTTGGT 9587 Query 475718 GGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTT--CATCA-TATTTTAATGGTAAA 475774 || || ||||||||||| ||||| |||| ||||| || | | |||||| || | Sbjct 9586 GGCTCCACAAGAATTCCCAAAAT-CCAGAA--GCTTTTGCAGGACTTTTTTAACGGCAGG 9530 Query 475775 AAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCA 475834 | | || | || | || || |||||||| || || || || ||||||||||| || Sbjct 9529 GACCTGAACAAGAGCATCAACCCAGATGAAGCCGTGGCCTACGGTGCTGCTGTCCAGGCT 9470 Query 475835 GCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACT 475894 ||||| | ||| | | |||||| | | || | | || | ||||| || Sbjct 9469 GCTATCCTCATGGGTGACACTTCCGAGAACGTCCAAGATCTGCTGCTGCTGGACGTGGCT 9410 Query 475895 CCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAAT 475954 || || || | || |||| || | || || ||||||| ||| || | | || Sbjct 9409 CCCCTGTCTCTGGGCATTGAGACTGCAGGTGGAGTTATGACGCCTCTAATCAAACGCAAC 9350 Query 475955 ACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACT 476014 || | ||||| |||| | | | || ||||| || || ||||| || || | Sbjct 9349 ACCACCATCCCCACCAAACAGACCCAGACCTTCTCCACATACTCGGATAACCAGCCAGGT 9290 Query 476015 GTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGA 476074 || || || | | || ||||| ||| | || || || || ||| || || Sbjct 9289 GTGCTGATTCAGGTGTACGAGGGTGAGAGAGCCATGACCAAGGACAACAACCTCCTGGGC 9230 Query 476075 ACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACT 476134 | ||| | || |||||| ||||| |||||| |||| || || || | || || ||| Sbjct 9229 AAGTTTGAGCTCACAGGTATCCCTCCAGCTCCCCGAGGTGTACCACAGGTGGAGGTAACT 9170 Query 476135 TTTGATATTGATGCAAATGGTATTCTTAATGT 476166 || || || ||||| || || ||||| ||||| Sbjct 9169 TTCGACATCGATGCCAACGGCATTCTGAATGT 9138 >seq33041 Length=13230 Score = 105 bits (116), Expect = 4e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||| ||| | || || || ||||||| || || | ||| | || || Sbjct 1628 TGAAGGTGAGAGAGCCATGACCAAGGACAATAACATTCTGGGCAAGTTTGAGCTGACCGG 1569 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| |||||||||||||| |||||||| ||||| || || ||||| |||||||| || Sbjct 1568 TATTCCACCTGCTCCCAGAGGTGTTCCTCAGATTGAGGTGACCTTTGACATTGATGCCAA 1509 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||| ||||| |||| Sbjct 1508 TGGCATTCTGAATGTATCTGC 1488 >seq5514 Length=41840 Score = 98.7 bits (108), Expect = 6e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 ||||| |||| ||| | ||||| || || || || ||||| ||||| || || || || Sbjct 38313 GTAACAAATGCTGTAGTGACTGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACC 38254 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| || | ||| | || || ||||| | ||||| || ||||||||||| || Sbjct 38253 AAAGATGCAGGGACCATTTCTGGGCTGAATGTCCTTCGTATCATCAATGAACCAACTGCT 38194 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || | ||||||||||| || || || Sbjct 38193 GCTGCTATCGCTTATGGTCTGGACAAAAA 38165 >seq34114 Length=5522 Score = 86.0 bits (94), Expect = 4e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 476089 AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGC 476148 ||| || ||||||||||| | || ||||| || |||||||| || |||||||||||||| Sbjct 5317 AGGGATCCCTCCTGCTCCTCGTGGTGTTCCCCAGATTGAAGTGACATTTGATATTGATGC 5258 Query 476149 AAATGGTATTCTTAATGTTACTGCT 476173 ||||| || |||||||| ||||| Sbjct 5257 CAATGGAATCCTTAATGTCTCTGCT 5233 >seq4872 Length=95549 Score = 86.0 bits (94), Expect = 4e-11 Identities = 121/167 (72%), Gaps = 5/167 (3%) Strand=Plus/Plus Query 474378 AAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATG 474437 ||||||| || || || || ||||||||||||||||| | | || |||||||||| Sbjct 782 AAAATGGCCGTGTGGAGATCATCGCCAATGACCAAGGTAACCGCATCACCCCATCATATG 841 Query 474438 TTTCTTT---TACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CA 474493 | | || | |||| ||| | ||| ||||| |||||||| || | | ||||| | Sbjct 842 TGGCCTTCACTGCTGAGGGTGAGCGTCTGATTGGTGATGCTGC-CAAGAACCAGCTGACC 900 Query 474494 TCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCG 474540 ||||| ||| ||| || | |||||||| || || |||||||| || Sbjct 901 TCTAACCCTAATAACACCGTCTTTGATGCCAAGAGGTTGATTGGGCG 947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266677365441776