Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq12683 163 2e-34
seq33041 105 4e-17
seq5514 98.7 6e-15
seq34114 86.0 4e-11
seq4872 86.0 4e-11
>seq12683
Length=55699
Score = 163 bits (180), Expect = 2e-34
Identities = 366/545 (67%), Gaps = 6/545 (1%)
Strand=Plus/Minus
Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391
||||| |||||| | || || || || |||||| | ||||| || |||| |||||
Sbjct 10582 ATTGGCATTGATCTGGGCACCACCTATTCTTGTGTCGGTGTTTTCCAGCATGGCAAAGTG 10523
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
|| || || ||||| ||||| || || ||||| || || ||||| | || |||||
Sbjct 10522 GAGATCATCGCCAACGACCAGGGCAACAGAACCACTCCCAGCTATGTGGCCTTCACTGAC 10463
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511
|| || || |||||||||||||| || | || | ||| ||||| || ||
Sbjct 10462 ACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAGGTTGCCATGAATCCCACCAACACA 10403
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
|| ||||| |||||| | | ||||| | || ||| | || ||| |||||| || ||
Sbjct 10402 ATCTTTGACGCTAAACGTCTCATTGGGAGAAAGTTTAACGACTCCATTGTCCAGTCCGAC 10343
Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATATAGAAGCAA 474629
||| | ||||| || |||||||| | || | ||| || || | | || |
Sbjct 10342 ATGAAACTCTGGCCATTCAAGGTGATCAGTGATAATGGAAAGCCCAAAGTCCAGGTTGAG 10283
Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689
|||| ||| || ||||| |||| || || |||| || || ||||| ||| |
Sbjct 10282 TACA--AAGGGGAGACTAAGGCCTTTTACCCAGAGGAAATCTCCTCCATGGTCCTAGTTA 10225
Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748
||||||| | | ||| ||| | || || |||||| |||| | |||| || || ||
Sbjct 10224 AAATGAAGGAGATCGCTGAG-GCCTACCTGGGACAAAAAGTGTCAAATGCGGTCATCACA 10166
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
||||| || ||||| || || || || | ||||| || || || || || || |
Sbjct 10165 GTTCCCGCTTATTTCAACGACTCCCAGAGGCAAGCCACCAAGGACGCCGGGGTGATCTCT 10106
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
|| || |||||| | | || || || || || |||||||| || ||||||| || ||
Sbjct 10105 GGACTGAATGTTCTGAGGATCATCAACGAGCCCACAGCAGCAGCCATTGCTTACGGCCTG 10046
Query 474869 GATAA 474873
|| ||
Sbjct 10045 GACAA 10041
Score = 113 bits (124), Expect = 3e-19
Identities = 519/812 (64%), Gaps = 16/812 (2%)
Strand=Plus/Minus
Query 475363 AGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCA 475420
||| || || ||||| |||| ||||| || || || ||||| || | | || | ||
Sbjct 9941 AGCCACCGCGGGAGACACACACCTTGGCGGGGAGGACTTTGACAACCGGATGGTCAACCA 9882
Query 475421 TGGTGTGTTGAAGATTTCAAGAGGAAAAATAA--AGTTGATCTTTCAACATCTGCTAAAG 475478
| | ||| || || || || || ||| | || || ||| ||| || | | ||
Sbjct 9881 T--TTTGTAGAGGAATTTAAAAGAAAACACAAGAAGGACATCAGCCAAAATAAG--AGAG 9826
Query 475479 CATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTC 475538
|| | || | || | || |||||||| | || ||| | | || || ||| || |
Sbjct 9825 CAGTGAGGAGGCTGCGCACAGCTTGTGAGAGAGCGAAGAGGACCCTGTCCTCTAGCACCC 9766
Query 475539 AAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACA 475597
| ||| |||| | || ||||| ||||| || || || || || ||| || |||
Sbjct 9765 AGGCTAGCATTGAGATCGACTCTCTGTTTGAGGGCATCGACTTCTACACCTCC-ATCACA 9707
Query 475598 AGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAA 475657
||||| |||||||| | || || || || || |||| | ||||| |||||
Sbjct 9706 AGGGCACGCTTTGAAGAGCTCAACTCCGAGCTTTTCAGGGGAACACTGGAACCAGTTGAG 9647
Query 475658 CAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGA 475717
| | || |||| | || || || || || |||||||||||| || || || ||
Sbjct 9646 AAGGCCCTGCAAGATGCCAAGCTGGATAAGTCCAGAGTCCATGAAATAGTCCTGGTTGGT 9587
Query 475718 GGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTT--CATCA-TATTTTAATGGTAAA 475774
|| || ||||||||||| ||||| |||| ||||| || | | |||||| || |
Sbjct 9586 GGCTCCACAAGAATTCCCAAAAT-CCAGAA--GCTTTTGCAGGACTTTTTTAACGGCAGG 9530
Query 475775 AAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCA 475834
| | || | || | || || |||||||| || || || || ||||||||||| ||
Sbjct 9529 GACCTGAACAAGAGCATCAACCCAGATGAAGCCGTGGCCTACGGTGCTGCTGTCCAGGCT 9470
Query 475835 GCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACT 475894
||||| | ||| | | |||||| | | || | | || | ||||| ||
Sbjct 9469 GCTATCCTCATGGGTGACACTTCCGAGAACGTCCAAGATCTGCTGCTGCTGGACGTGGCT 9410
Query 475895 CCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAAT 475954
|| || || | || |||| || | || || ||||||| ||| || | | ||
Sbjct 9409 CCCCTGTCTCTGGGCATTGAGACTGCAGGTGGAGTTATGACGCCTCTAATCAAACGCAAC 9350
Query 475955 ACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACT 476014
|| | ||||| |||| | | | || ||||| || || ||||| || || |
Sbjct 9349 ACCACCATCCCCACCAAACAGACCCAGACCTTCTCCACATACTCGGATAACCAGCCAGGT 9290
Query 476015 GTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGA 476074
|| || || | | || ||||| ||| | || || || || ||| || ||
Sbjct 9289 GTGCTGATTCAGGTGTACGAGGGTGAGAGAGCCATGACCAAGGACAACAACCTCCTGGGC 9230
Query 476075 ACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACT 476134
| ||| | || |||||| ||||| |||||| |||| || || || | || || |||
Sbjct 9229 AAGTTTGAGCTCACAGGTATCCCTCCAGCTCCCCGAGGTGTACCACAGGTGGAGGTAACT 9170
Query 476135 TTTGATATTGATGCAAATGGTATTCTTAATGT 476166
|| || || ||||| || || ||||| |||||
Sbjct 9169 TTCGACATCGATGCCAACGGCATTCTGAATGT 9138
>seq33041
Length=13230
Score = 105 bits (116), Expect = 4e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091
||||||||| ||| | || || || ||||||| || || | ||| | || ||
Sbjct 1628 TGAAGGTGAGAGAGCCATGACCAAGGACAATAACATTCTGGGCAAGTTTGAGCTGACCGG 1569
Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151
|||||| |||||||||||||| |||||||| ||||| || || ||||| |||||||| ||
Sbjct 1568 TATTCCACCTGCTCCCAGAGGTGTTCCTCAGATTGAGGTGACCTTTGACATTGATGCCAA 1509
Query 476152 TGGTATTCTTAATGTTACTGC 476172
||| ||||| ||||| ||||
Sbjct 1508 TGGCATTCTGAATGTATCTGC 1488
>seq5514
Length=41840
Score = 98.7 bits (108), Expect = 6e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787
||||| |||| ||| | ||||| || || || || ||||| ||||| || || || ||
Sbjct 38313 GTAACAAATGCTGTAGTGACTGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACC 38254
Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847
|||||||| || | ||| | || || ||||| | ||||| || ||||||||||| ||
Sbjct 38253 AAAGATGCAGGGACCATTTCTGGGCTGAATGTCCTTCGTATCATCAATGAACCAACTGCT 38194
Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876
|| || | ||||||||||| || || ||
Sbjct 38193 GCTGCTATCGCTTATGGTCTGGACAAAAA 38165
>seq34114
Length=5522
Score = 86.0 bits (94), Expect = 4e-11
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 476089 AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGC 476148
||| || ||||||||||| | || ||||| || |||||||| || ||||||||||||||
Sbjct 5317 AGGGATCCCTCCTGCTCCTCGTGGTGTTCCCCAGATTGAAGTGACATTTGATATTGATGC 5258
Query 476149 AAATGGTATTCTTAATGTTACTGCT 476173
||||| || |||||||| |||||
Sbjct 5257 CAATGGAATCCTTAATGTCTCTGCT 5233
>seq4872
Length=95549
Score = 86.0 bits (94), Expect = 4e-11
Identities = 121/167 (72%), Gaps = 5/167 (3%)
Strand=Plus/Plus
Query 474378 AAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATG 474437
||||||| || || || || ||||||||||||||||| | | || ||||||||||
Sbjct 782 AAAATGGCCGTGTGGAGATCATCGCCAATGACCAAGGTAACCGCATCACCCCATCATATG 841
Query 474438 TTTCTTT---TACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CA 474493
| | || | |||| ||| | ||| ||||| |||||||| || | | ||||| |
Sbjct 842 TGGCCTTCACTGCTGAGGGTGAGCGTCTGATTGGTGATGCTGC-CAAGAACCAGCTGACC 900
Query 474494 TCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCG 474540
||||| ||| ||| || | |||||||| || || |||||||| ||
Sbjct 901 TCTAACCCTAATAACACCGTCTTTGATGCCAAGAGGTTGATTGGGCG 947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3266677365441776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |