Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq6507 158 1e-33 >seq6507 Length=50053 Score = 158 bits (174), Expect = 1e-33 Identities = 484/728 (66%), Gaps = 19/728 (3%) Strand=Plus/Minus Query 160241 CCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTG-TAC-ATCAGG 160298 ||||||||| | | || | ||||||||||| || || ||||| ||| | | | |||| Sbjct 38185 CCACTTCACCACACGAGCAAAGGCCTGCATGTCTGACGTATCGTACTTGATGCTAGCAGG 38126 Query 160299 GGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGG 160358 | | ||||||||| |||||| | | ||| |||||||||| ||| || || ||| Sbjct 38125 C--AGTGATCCGGGAACGGAGGGCATCCTCATTAGCGTGGCCCACAAGTGCTCATCAGGG 38068 Query 160359 CTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAAC-CTGTCCCGCAGAACGTG 160417 ||||| |||||||| ||| |||| || | || || | |||||| || || || Sbjct 38067 CTGTATGTGTCCTTCTCCCACTCCAA-AAGTTTCTGAACCTCTCTGTCCTCCATCACATG 38009 Query 160418 AGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTAT 160477 | || | | |||||| || |||||||| || | || ||||| || || || || Sbjct 38008 TTTCACAAAAGCTCTGGTGACCACAAAGTAAGCATTTCCTGAGAACATGGGGCTGCTAAT 37949 Query 160478 AGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG-CGTGTC 160536 || || | | |||| |||| || ||| | || | | ||| | ||| Sbjct 37948 GGGTGGGG-GACTTT-TCCTCACGTCTGTCCTG-ATGACGC-TGTCAGTGACATCGTAAT 37893 Query 160537 GCTTCTTCCACCTGACCATCTTGTG--CGGTGGCATGCGTTCCGTCTCTAGACTGTTGGC 160594 | | || ||| | | || | |||| | ||| || || | ||| | ||||| Sbjct 37892 GATACTGCCAACGGCCCTTTTTGTAGTCATTGG--TGGTCTCAGACTCCATGCTGTTTCT 37835 Query 160595 ACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGT 160654 || | ||| | ||||| ||| | |||||| || || |||| || ||||| || Sbjct 37834 CCCATTGAGGGCCTTCAGTACCTTAATTATCTCTCTATTGGTTTTGATGGGGAAGTCCGT 37775 Query 160655 ACCGCACAAGTTTATCACGTACTTCCATTTCGCGC-TCAGGTCGTGCAGGTCCCTCATGC 160713 ||||| ||| | || ||| |||| || | | || || |||| || ||||||| Sbjct 37774 CCCGCAGGTGTTAAGCATGTATCTCCACTTGACATGTGAGCTCA-GCAGATCTCTCATGC 37716 Query 160714 AATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGG 160773 | || | |||||||||||| ||| ||| || || || | || | |||| | || ||| Sbjct 37715 AGTTCAAATCTGCCTGCACCCGGGACCATGAGGCATATATCACTCTTTCTAATCTAGTGG 37656 Query 160774 CCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTAT 160833 | ||||| |||||| || || || || ||| || |||| |||| || |||| | Sbjct 37655 CTACAAACACGTTAGGCAAGCAGGAAACAATTGCCTCCACAGCCA-TCTTAAATTCTTGT 37597 Query 160834 CCGCCTTTC-GGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGC 160892 | |||| |||||| ||||| || || | ||||||||| | ||| || || | || Sbjct 37596 GAGGATTTCTTGTCCACATGCACACAGTAGATGTTCTGAGGAGTGTAAATAGCTCGCAGA 37537 Query 160893 AACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCG 160952 | | ||| |||||||| ||||| | ||||||||| || |||||||| || ||||| || Sbjct 37536 AGTCGCTCAAACATCTCAATCTTCTCATGGATCACCATGGAGTAGGCAATGGGAAAATCC 37477 Query 160953 GTCTCCTC 160960 |||| || Sbjct 37476 TTCTCTTC 37469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576966580017120