Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16]
35,012 sequences; 585,166,552 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq6507 158 1e-33
>seq6507
Length=50053
Score = 158 bits (174), Expect = 1e-33
Identities = 484/728 (66%), Gaps = 19/728 (3%)
Strand=Plus/Minus
Query 160241 CCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTG-TAC-ATCAGG 160298
||||||||| | | || | ||||||||||| || || ||||| ||| | | | ||||
Sbjct 38185 CCACTTCACCACACGAGCAAAGGCCTGCATGTCTGACGTATCGTACTTGATGCTAGCAGG 38126
Query 160299 GGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGG 160358
| | ||||||||| |||||| | | ||| |||||||||| ||| || || |||
Sbjct 38125 C--AGTGATCCGGGAACGGAGGGCATCCTCATTAGCGTGGCCCACAAGTGCTCATCAGGG 38068
Query 160359 CTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAAC-CTGTCCCGCAGAACGTG 160417
||||| |||||||| ||| |||| || | || || | |||||| || || ||
Sbjct 38067 CTGTATGTGTCCTTCTCCCACTCCAA-AAGTTTCTGAACCTCTCTGTCCTCCATCACATG 38009
Query 160418 AGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTAT 160477
| || | | |||||| || |||||||| || | || ||||| || || || ||
Sbjct 38008 TTTCACAAAAGCTCTGGTGACCACAAAGTAAGCATTTCCTGAGAACATGGGGCTGCTAAT 37949
Query 160478 AGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG-CGTGTC 160536
|| || | | |||| |||| || ||| | || | | ||| | |||
Sbjct 37948 GGGTGGGG-GACTTT-TCCTCACGTCTGTCCTG-ATGACGC-TGTCAGTGACATCGTAAT 37893
Query 160537 GCTTCTTCCACCTGACCATCTTGTG--CGGTGGCATGCGTTCCGTCTCTAGACTGTTGGC 160594
| | || ||| | | || | |||| | ||| || || | ||| | |||||
Sbjct 37892 GATACTGCCAACGGCCCTTTTTGTAGTCATTGG--TGGTCTCAGACTCCATGCTGTTTCT 37835
Query 160595 ACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGT 160654
|| | ||| | ||||| ||| | |||||| || || |||| || ||||| ||
Sbjct 37834 CCCATTGAGGGCCTTCAGTACCTTAATTATCTCTCTATTGGTTTTGATGGGGAAGTCCGT 37775
Query 160655 ACCGCACAAGTTTATCACGTACTTCCATTTCGCGC-TCAGGTCGTGCAGGTCCCTCATGC 160713
||||| ||| | || ||| |||| || | | || || |||| || |||||||
Sbjct 37774 CCCGCAGGTGTTAAGCATGTATCTCCACTTGACATGTGAGCTCA-GCAGATCTCTCATGC 37716
Query 160714 AATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGG 160773
| || | |||||||||||| ||| ||| || || || | || | |||| | || |||
Sbjct 37715 AGTTCAAATCTGCCTGCACCCGGGACCATGAGGCATATATCACTCTTTCTAATCTAGTGG 37656
Query 160774 CCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTAT 160833
| ||||| |||||| || || || || ||| || |||| |||| || |||| |
Sbjct 37655 CTACAAACACGTTAGGCAAGCAGGAAACAATTGCCTCCACAGCCA-TCTTAAATTCTTGT 37597
Query 160834 CCGCCTTTC-GGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGC 160892
| |||| |||||| ||||| || || | ||||||||| | ||| || || | ||
Sbjct 37596 GAGGATTTCTTGTCCACATGCACACAGTAGATGTTCTGAGGAGTGTAAATAGCTCGCAGA 37537
Query 160893 AACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCG 160952
| | ||| |||||||| ||||| | ||||||||| || |||||||| || ||||| ||
Sbjct 37536 AGTCGCTCAAACATCTCAATCTTCTCATGGATCACCATGGAGTAGGCAATGGGAAAATCC 37477
Query 160953 GTCTCCTC 160960
|||| ||
Sbjct 37476 TTCTCTTC 37469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576966580017120
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