Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morone_20saxatilis_20[genbank_20GCA_5F001663605.1_202016-06-16] 35,012 sequences; 585,166,552 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq15996 95.1 4e-14 >seq15996 Length=6831 Score = 95.1 bits (104), Expect = 4e-14 Identities = 356/558 (64%), Gaps = 3/558 (1%) Strand=Plus/Minus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCACAG 155648 || || ||||||||||| ||||| ||| | |||| | |||| || || || || | Sbjct 1856 ATGGAGGCCAGATTACACACCGCTACCTCATCGTCGCTGGTGTACTCAACTATTTCTGTG 1797 Query 155649 CACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCA 155708 || ||||| || ||||||||||| | ||||| |||||| || ||||| || || Sbjct 1796 CAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCG 1737 Query 155709 TCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAG 155768 || ||||| || ||||| || || || || ||| |||| | || | ||| |||| Sbjct 1736 TCTTTGTACAGCATGTACGGCGTACCGGTTTCCGTCTGGGACTCGATAATGGCGTGCCAC 1677 Query 155769 AGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGC 155828 | | | || || | ||| || || ||| |||||| | | |||||| Sbjct 1676 ACCTGCTGAGCCTTCACCACGCGCTTGACCCTCCCCTCCTTCTCATACGTGGTGTACAGC 1617 Query 155829 GTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGC 155888 | | | ||||| || | || || ||| || ||||||| | || || | ||| Sbjct 1616 TTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGA 1557 Query 155889 GACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAG 155948 ||||| || || | || | || ||| || | || ||| || || ||| Sbjct 1556 GACCAGTCTTGGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACATGGCGTAG 1497 Query 155949 AAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCC 156008 |||||||| || ||| | |||||| | ||| |||||| ||||| | ||| || Sbjct 1496 AAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAGGAAGTCA 1437 Query 156009 TCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTC---TTGCCA 156065 | || || |||||||| ||||| ||||| || |||| ||||| Sbjct 1436 AACACGTCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGTTGCCT 1377 Query 156066 CCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTG 156125 ||||| || || || || || || || ||| |||| | ||||| || | | || ||| Sbjct 1376 CCCTGGTCGACGTAACGCGCCGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCCCGTTG 1317 Query 156126 GAAGTGCCATTGGTTCCG 156143 || |||| ||||| ||| Sbjct 1316 GAGTTGCCGTTGGTGCCG 1299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471157355503044